Factsheet for Bra034029.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034027.1-P	Field mustard	plastid	99.45	99.45
Bra034024.1-P	Field mustard	plastid	94.48	94.48
CDY42337	Canola	plastid	93.92	93.92
CDY42338	Canola	plastid	93.37	93.37
Bra028406.1-P	Field mustard	plastid	88.95	88.95
AT1G67090.1	Thale cress	plastid	87.85	88.33
Bra028181.1-P	Field mustard	plastid	79.01	88.27
Bra025431.1-P	Field mustard	plastid	87.29	87.29
Bra028174.1-P	Field mustard	plastid	86.74	86.74
GSMUA_Achr8P18400_001	Banana	cytosol	11.05	76.92
GSMUA_Achr10P...	Banana	plasma membrane	62.43	71.52
GSMUA_Achr2P22730_001	Banana	unclear	61.88	70.89
PGSC0003DMT400067905	Potato	plastid	61.88	70.44
GSMUA_Achr6P09710_001	Banana	plastid	60.77	69.62
PGSC0003DMT400062138	Potato	cytosol, plastid	67.96	67.96
PGSC0003DMT400032975	Potato	mitochondrion, plastid	67.4	67.78
VIT_17s0000g03690.t01	Wine grape	plastid	67.4	67.78
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	67.4	67.4
Solyc03g034220.2.1	Tomato	plastid	66.85	67.22
Solyc02g085950.2.1	Tomato	extracellular	66.3	66.67
Solyc02g063150.2.1	Tomato	nucleus, plastid	66.3	66.3
TraesCS2A01G067200.1	Wheat	plastid	59.67	61.71
HORVU1Hr1G035720.2	Barley	plastid	59.67	61.36
HORVU5Hr1G038630.1	Barley	plastid	59.12	61.14
HORVU2Hr1G010630.1	Barley	plastid	59.12	61.14
HORVU2Hr1G010690.1	Barley	plastid	59.12	61.14
Os12t0291400-01	Rice	plastid	59.12	61.14
Os12t0291100-01	Rice	plastid	59.12	61.14
Os12t0274700-01	Rice	plastid	59.12	61.14
HORVU5Hr1G051010.2	Barley	plastid	59.12	61.14
HORVU5Hr1G033540.2	Barley	plastid	59.12	61.14
TraesCS2B01G079300.1	Wheat	plastid	58.56	60.92
TraesCS2D01G065300.1	Wheat	plastid	58.56	60.92
TraesCS2A01G066700.1	Wheat	plastid	58.56	60.92
TraesCS2D01G065500.1	Wheat	plastid	55.25	60.61
Zm00001d004894_P001	Maize	plastid	56.91	60.59
TraesCS2B01G079400.1	Wheat	plastid	58.56	60.57
TraesCS2B01G079200.1	Wheat	plastid	58.56	60.57
TraesCS2D01G065200.1	Wheat	plastid	58.56	60.57
TraesCS2A01G067300.1	Wheat	plastid	58.56	60.57
TraesCS2D01G065600.1	Wheat	plastid	58.56	60.57
TraesCS5D01G169900.2	Wheat	plastid	58.56	60.57
TraesCS5A01G165400.2	Wheat	plastid	58.56	60.57
TraesCS5D01G169600.2	Wheat	plastid	58.56	60.57
Os12t0292400-01	Rice	extracellular	58.56	60.57
TraesCS5B01G162800.1	Wheat	plastid	58.56	60.57
TraesCS5A01G165700.1	Wheat	plastid	58.56	60.57
TraesCS5B01G162600.1	Wheat	plastid	58.56	60.57
EES09292	Sorghum	plastid	56.35	60.35
TraesCS2B01G079100.1	Wheat	plastid	58.01	60.34
TraesCS2D01G065400.1	Wheat	plastid	58.01	60.0
Zm00001d052595_P001	Maize	plastid	56.35	60.0
TraesCS2A01G067100.1	Wheat	plastid	58.01	60.0
TraesCS2A01G066800.1	Wheat	plastid	58.01	60.0
KRH46925	Soybean	plastid	29.83	60.0
TraesCS2D01G065100.2	Wheat	plastid	57.46	59.77
TraesCS2A01G067000.1	Wheat	plastid	56.91	58.86
TraesCS2B01G078900.2	Wheat	plastid	58.01	56.76
HORVU2Hr1G010670.1	Barley	plastid	59.12	56.32
KRH01757	Soybean	plastid	45.86	55.33
TraesCS2A01G066900.1	Wheat	plastid	58.56	55.21
TraesCS2B01G079500.1	Wheat	plastid	58.56	54.92
KRG99965	Soybean	plastid	34.81	48.09
KRG99964	Soybean	plastid	26.52	48.0
HORVU5Hr1G050990.4	Barley	plastid	49.72	46.88
Os12t0291200-00	Rice	plastid	23.76	44.79
KRH15458	Soybean	plastid	34.81	39.62
HORVU7Hr1G048050.2	Barley	plastid	17.13	35.23

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EnsemblPlantsGene:Bra034029	EnsemblPlants:Bra034029.1
EnsemblPlants:Bra034029.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	UniProt:M4EYY6	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0002545D24	:	:

Description

AT5G38430 (E=2e-094) | ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)

Coordinates

chrA02:-:10093361..10094183

Molecular Weight (calculated)

20325.5 Da

IEP (calculated)

8.351

GRAVY (calculated)

-0.162

Length

181 amino acids

Sequence
(BLAST)

001: MASVMLSSAT MASSPAHATM VAPFIGLKSS AAFPVTCKAN TKVTSITSNG GRVNCMKVWP PVGKKKFETL SYLPDLTDVE IAKEVDYLIR NKWTPCIEFE
101: LEHGFVYREH GNIPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKKEYP NAFIRIIGFD NNRQAQCISF IAYKPPSFTD A

Best Arabidopsis Sequence Match ( AT5G38430.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTD A

Arabidopsis Description

RBCS-1BRibulose bisphosphate carboxylase small chain 1B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10796]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.