Factsheet for Os12t0292400-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 21433289
extracellular: 23159799
extracellular: 25047395
extracellular: 26072143
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0621300-01
Os01t0915400-00
Os01t0948900-01
Os02t0258300-01
Os02t0489550-00
Os02t0708400-01
Os03t0673000-00
Os03t0673500-00
Os03t0727000-02
Os03t0727200-00
Os03t0771500-01
Os03t0772100-00
Os04t0627000-02
Os05t0586400-01
Os06t0524300-01
Os07t0129700-01
Os08t0136100-01
Os08t0187500-01
Os08t0428400-01
Os08t0520900-00
Os10t0362300-03
Os11t0141900-00
Os12t0138500-01
Os12t0538300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	Os10t0362300-03	AT5G35750.1	18642946
AT5G38420.1	Os01t0621300-01	AT1G01440.1	21798944
AT5G38420.1	Os02t0258300-01	AT1G01440.1	21798944
AT5G38420.1	Os05t0586400-01	AT1G01440.1	21798944
AT5G38420.1	Os06t0524300-01	AT1G01440.1	21798944
AT5G38420.1	Os01t0948900-01	AT2G41370.1	21798944
AT5G38420.1	Os11t0141900-00	AT2G41370.1	21798944
AT5G38420.1	Os12t0138500-01	AT2G41370.1	21798944
AT5G38420.1	Os01t0915400-00	AT3G04240.1	21798944
AT5G38420.1	Os02t0489550-00	AT3G04240.1	21798944
AT5G38420.1	Os08t0428400-01	AT3G17860.1	21798944
AT5G38420.1	Os02t0708400-01	AT3G27960.1	21798944
AT5G38420.1	Os04t0627000-02	AT4G04890.1	21798944
AT5G38420.1	Os08t0136100-01	AT4G04890.1	21798944
AT5G38420.1	Os08t0187500-01	AT4G04890.1	21798944
AT5G38420.1	Os03t0673000-00	AT4G08150.1	21798944
AT5G38420.1	Os03t0673500-00	AT4G08150.1	21798944
AT5G38420.1	Os03t0727000-02	AT4G08150.1	21798944
AT5G38420.1	Os03t0727200-00	AT4G08150.1	21798944
AT5G38420.1	Os03t0771500-01	AT4G08150.1	21798944
AT5G38420.1	Os03t0772100-00	AT4G08150.1	21798944
AT5G38420.1	Os07t0129700-01	AT4G08150.1	21798944
AT5G38420.1	Os12t0538300-01	AT5G11980.1	21798944
AT5G38430.1	Os08t0520900-00	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0274700-01	Rice	plastid	97.14	97.14
Os12t0291100-01	Rice	plastid	96.57	96.57
Os12t0291400-01	Rice	plastid	95.43	95.43
HORVU5Hr1G051010.2	Barley	plastid	83.43	83.43
HORVU5Hr1G038630.1	Barley	plastid	83.43	83.43
TraesCS2D01G065200.1	Wheat	plastid	83.43	83.43
TraesCS2D01G065300.1	Wheat	plastid	82.86	83.33
TraesCS2B01G079100.1	Wheat	plastid	82.86	83.33
TraesCS2A01G066700.1	Wheat	plastid	82.86	83.33
TraesCS5D01G169900.2	Wheat	plastid	82.86	82.86
TraesCS5D01G169600.2	Wheat	plastid	82.86	82.86
TraesCS5B01G162800.1	Wheat	plastid	82.86	82.86
TraesCS5B01G162600.1	Wheat	plastid	82.86	82.86
TraesCS5A01G165700.1	Wheat	plastid	82.86	82.86
TraesCS5A01G165400.2	Wheat	plastid	82.86	82.86
HORVU5Hr1G033540.2	Barley	plastid	82.86	82.86
TraesCS2B01G079200.1	Wheat	plastid	82.86	82.86
TraesCS2B01G079300.1	Wheat	plastid	82.29	82.76
TraesCS2D01G065100.2	Wheat	plastid	82.29	82.76
TraesCS2A01G066800.1	Wheat	plastid	82.29	82.29
HORVU2Hr1G010690.1	Barley	plastid	82.29	82.29
HORVU2Hr1G010630.1	Barley	plastid	82.29	82.29
TraesCS2A01G067300.1	Wheat	plastid	81.71	81.71
TraesCS2B01G079400.1	Wheat	plastid	81.71	81.71
TraesCS2D01G065600.1	Wheat	plastid	81.71	81.71
TraesCS2D01G065500.1	Wheat	plastid	76.57	81.21
TraesCS2A01G067200.1	Wheat	plastid	81.14	81.14
TraesCS2D01G065400.1	Wheat	plastid	81.14	81.14
TraesCS2A01G067100.1	Wheat	plastid	81.14	81.14
TraesCS2A01G067000.1	Wheat	plastid	80.57	80.57
HORVU1Hr1G035720.2	Barley	plastid	80.57	80.11
Zm00001d004894_P001	Maize	plastid	77.71	80.0
Zm00001d052595_P001	Maize	plastid	77.14	79.41
EES09292	Sorghum	plastid	75.43	78.11
GSMUA_Achr8P18400_001	Banana	cytosol	11.43	76.92
GSMUA_Achr6P09710_001	Banana	plastid	69.14	76.58
HORVU2Hr1G010670.1	Barley	plastid	82.29	75.79
TraesCS2A01G066900.1	Wheat	plastid	82.86	75.52
TraesCS2B01G078900.2	Wheat	plastid	79.43	75.14
TraesCS2B01G079500.1	Wheat	plastid	81.71	74.09
GSMUA_Achr2P22730_001	Banana	unclear	66.86	74.05
GSMUA_Achr10P...	Banana	plasma membrane	66.29	73.42
PGSC0003DMT400067905	Potato	plastid	65.14	71.7
PGSC0003DMT400032975	Potato	mitochondrion, plastid	69.71	67.78
Os12t0291200-00	Rice	plastid	36.57	66.67
Solyc02g085950.2.1	Tomato	extracellular	68.57	66.67
KRG93867	Soybean	plastid	67.43	66.29
KRG93871	Soybean	plastid	67.43	66.29
KRH18247	Soybean	nucleus, plastid	67.43	66.29
Solyc03g034220.2.1	Tomato	plastid	67.43	65.56
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	67.43	65.19
Solyc02g063150.2.1	Tomato	nucleus, plastid	67.43	65.19
Bra028181.1-P	Field mustard	plastid	58.86	63.58
PGSC0003DMT400062138	Potato	cytosol, plastid	65.71	63.54
HORVU5Hr1G050990.4	Barley	plastid	68.57	62.5
AT1G67090.1	Thale cress	plastid	64.0	62.22
AT5G38430.1	Thale cress	plastid	64.0	61.88
AT5G38420.1	Thale cress	plastid	64.0	61.88
CDY52468	Canola	plastid	63.43	61.33
Bra028174.1-P	Field mustard	plastid	62.86	60.77
Bra025431.1-P	Field mustard	plastid	62.86	60.77
CDY01665	Canola	plastid	62.86	60.77
CDY67657	Canola	plastid	62.86	60.77
CDY71122	Canola	plastid	62.86	60.77
AT5G38410.3	Thale cress	plastid	64.57	60.75
CDX67402	Canola	plastid	62.29	60.22
CDX74525	Canola	plastid	62.29	60.22
CDX74532	Canola	plastid	62.29	60.22
CDY01671	Canola	plastid	62.29	60.22
VIT_17s0000g03690.t01	Wine grape	plastid	61.71	60.0
Bra028406.1-P	Field mustard	plastid	61.71	59.67
CDY42338	Canola	plastid	61.71	59.67
CDX99682	Canola	plastid	63.43	58.73
Bra034027.1-P	Field mustard	plastid	60.57	58.56
Bra034029.1-P	Field mustard	plastid	60.57	58.56
CDY12613	Canola	plastid	60.57	58.56
CDY12612	Canola	cytosol	40.0	57.85
KRG93872	Soybean	plastid	44.57	57.78
CDY12616	Canola	plastid	58.86	56.91
Bra034024.1-P	Field mustard	plastid	58.86	56.91
CDY42337	Canola	plastid	58.29	56.35
KRH01757	Soybean	plastid	45.71	53.33
CDY42341	Canola	plastid	56.0	52.69
KRH46925	Soybean	plastid	26.86	52.22
KRG93873	Soybean	plastid	29.71	49.52
KRG99965	Soybean	plastid	36.0	48.09
HORVU7Hr1G048050.2	Barley	plastid	23.43	46.59
KRG99964	Soybean	plastid	25.71	45.0
Os02t0152400-01	Rice	plastid	44.57	42.62
KRH15458	Soybean	plastid	33.14	36.48

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EntrezGene:4352021	ProteinID:ABA97179.1
ProteinID:ABA97180.1	EMBL:AK068266	EMBL:AK070257	ProteinID:BAF29626.1	ProteinID:BAT16793.1	ProteinID:EAZ20216.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853
GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984
GO:GO:0055114	InterPro:IPR036385	EnsemblPlantsGene:Os12g0292400	EnsemblPlants:Os12t0292400-01	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	UniProt:Q2QTJ1	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom
InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI00006814AC	RefSeq:XP_015620270.1
SEG:seg	:	:	:	:	:

Description

nuclear encoded small subunit of ribulose-1, 5-bisphosphate carboxylase/oxygenase, RuBisCO small subunit 4, Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase Small Subunit 4Similar to Petunia ribulose 1,5-bisphosphate carboxylase small subunit mRNA (clone pSSU 51), partial cds. (Fragment). (Os12t0292400-01)

Coordinates

chr12:+:11320409..11322505

Molecular Weight (calculated)

19661.7 Da

IEP (calculated)

9.125

GRAVY (calculated)

-0.228

Length

175 amino acids

Sequence
(BLAST)

001: MAPSVMASSA TSVAPFQGLK STAGLPVNRR SSSSSFGNVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE
101: NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF DNVRQVQLIS FIAYKPPGCE ESGGN

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.