CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93867	Soybean	plastid	99.44	99.44
KRG93871	Soybean	plastid	99.44	99.44
KRH46925	Soybean	plastid	42.7	84.44
KRG93872	Soybean	plastid	63.48	83.7
PGSC0003DMT400067905	Potato	plastid	72.47	81.13
PGSC0003DMT400062138	Potato	cytosol, plastid	80.34	79.01
PGSC0003DMT400032975	Potato	mitochondrion, plastid	79.78	78.89
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	79.21	77.9
Solyc03g034220.2.1	Tomato	plastid	78.65	77.78
Solyc02g085950.2.1	Tomato	extracellular	78.09	77.22
Solyc02g063150.2.1	Tomato	nucleus, plastid	77.53	76.24
KRG93873	Soybean	plastid	44.38	75.24
GSMUA_Achr2P22730_001	Banana	unclear	65.17	73.42
GSMUA_Achr6P09710_001	Banana	plastid	65.17	73.42
GSMUA_Achr8P18400_001	Banana	cytosol	10.67	73.08
GSMUA_Achr10P...	Banana	plasma membrane	64.61	72.78
KRG99964	Soybean	plastid	38.2	68.0
Os12t0274700-01	Rice	plastid	66.85	68.0
Os12t0291100-01	Rice	plastid	66.85	68.0
Os12t0291400-01	Rice	plastid	66.29	67.43
Os12t0292400-01	Rice	extracellular	66.29	67.43
KRH01757	Soybean	plastid	56.18	66.67
Zm00001d004894_P001	Maize	plastid	63.48	66.47
KRG99965	Soybean	plastid	47.75	64.89
Zm00001d052595_P001	Maize	plastid	61.24	64.12
EES09292	Sorghum	plastid	60.67	63.91
HORVU1Hr1G035720.2	Barley	plastid	61.8	62.5
HORVU5Hr1G051010.2	Barley	plastid	61.24	62.29
HORVU2Hr1G010630.1	Barley	plastid	61.24	62.29
HORVU2Hr1G010690.1	Barley	plastid	61.24	62.29
HORVU5Hr1G038630.1	Barley	plastid	61.24	62.29
HORVU5Hr1G033540.2	Barley	plastid	61.24	62.29
TraesCS2B01G079300.1	Wheat	plastid	60.67	62.07
TraesCS2D01G065300.1	Wheat	plastid	60.67	62.07
TraesCS2A01G066700.1	Wheat	plastid	60.67	62.07
TraesCS2D01G065500.1	Wheat	plastid	57.3	61.82
TraesCS2B01G079400.1	Wheat	plastid	60.67	61.71
TraesCS5B01G162800.1	Wheat	plastid	60.67	61.71
TraesCS5B01G162600.1	Wheat	plastid	60.67	61.71
TraesCS5A01G165700.1	Wheat	plastid	60.67	61.71
TraesCS5A01G165400.2	Wheat	plastid	60.67	61.71
TraesCS2D01G065600.1	Wheat	plastid	60.67	61.71
TraesCS2D01G065400.1	Wheat	plastid	60.67	61.71
TraesCS2D01G065200.1	Wheat	plastid	60.67	61.71
TraesCS5D01G169600.2	Wheat	plastid	60.67	61.71
TraesCS2B01G079200.1	Wheat	plastid	60.67	61.71
TraesCS2A01G067300.1	Wheat	plastid	60.67	61.71
TraesCS2A01G066800.1	Wheat	plastid	60.67	61.71
TraesCS5D01G169900.2	Wheat	plastid	60.67	61.71
TraesCS2B01G079100.1	Wheat	plastid	60.11	61.49
TraesCS2A01G067200.1	Wheat	plastid	60.11	61.14
TraesCS2A01G067100.1	Wheat	plastid	60.11	61.14
TraesCS2D01G065100.2	Wheat	plastid	59.55	60.92
TraesCS2A01G067000.1	Wheat	plastid	59.55	60.57
HORVU2Hr1G010670.1	Barley	plastid	61.24	57.37
TraesCS2B01G078900.2	Wheat	plastid	59.55	57.3
TraesCS2A01G066900.1	Wheat	plastid	60.67	56.25
TraesCS2B01G079500.1	Wheat	plastid	60.67	55.96
KRH15458	Soybean	plastid	47.19	52.83
KRH19034	Soybean	plastid	48.88	50.58
Os12t0291200-00	Rice	plastid	26.97	50.0
HORVU5Hr1G050990.4	Barley	plastid	52.25	48.44
HORVU7Hr1G048050.2	Barley	plastid	19.1	38.64

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	EntrezGene:100500504	Gene3D:3.30.190.10	EMBL:ACUP02008049
EMBL:BT091438	UniProt:C6T1Y2	EnsemblPlantsGene:GLYMA_13G046200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253
GO:GO:0055114	InterPro:IPR036385	EnsemblPlants:KRH18247	ProteinID:KRH18247	ProteinID:KRH18247.1	PFAM:PF00101
PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	MetaCyc:PWY-5532	MetaCyc:PWY-5723
InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239
UniParc:UPI0001B14DBA	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:14043433..14044927

Molecular Weight (calculated)

20020.2 Da

IEP (calculated)

8.865

GRAVY (calculated)

-0.239

Length

178 amino acids

Sequence
(BLAST)

001: MASSMISSPA VTTVNRAGAG MVAPFTGLKS MAGFPTRKTN NDITSIASNG GRVQCMQVWP PIGKKKFETL SYLPDLDDAQ LAKEVEYLLR KGWIPCLEFE
101: LEHGFVYREH NRSPGYYDGR YWTMWKLPMF GCTDASQVLK ELQEAKTAYP NGFIRIIGFD NVRQVQCISF IAYKPPGF

Best Arabidopsis Sequence Match ( AT5G38410.1 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.