Factsheet for HORVU5Hr1G038630.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 17675669
plastid: 21440687

msms PMID: 21440687 doi

M Plöscher, V Reisinger, LA Eichacker

TRION Pharma GmbH, Munich, Germany.

msms PMID: 17675669 doi

S Frigerio, C Campoli, S Zorzan, LI Fantoni, C Crosatti, F Drepper, W Haehnel, L Cattivelli, T Morosinotto, R Bassi

LGBP, UMR 6191 CEA-CNRS-Université de la Méditerranée, Marseille 13288, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU2Hr1G061320.3
HORVU2Hr1G067320.4
HORVU3Hr1G055550.3
HORVU3Hr1G106880.5
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G087520.3
HORVU5Hr1G025740.13
HORVU5Hr1G060730.3
HORVU5Hr1G098570.6
HORVU6Hr1G069310.1
HORVU7Hr1G051710.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT5G38420.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT5G38420.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G38420.1	HORVU2Hr1G067320.4	AT3G04240.1	21798944
AT5G38420.1	HORVU4Hr1G087520.3	AT3G17860.1	21798944
AT5G38420.1	HORVU5Hr1G060730.3	AT3G17860.1	21798944
AT5G38420.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G38420.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G025740.13	AT5G11980.1	21798944
AT5G38430.1	HORVU7Hr1G051710.1	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G051010.2	Barley	plastid	100.0	100.0
TraesCS5D01G169900.2	Wheat	plastid	99.43	99.43
TraesCS5D01G169600.2	Wheat	plastid	99.43	99.43
TraesCS5B01G162800.1	Wheat	plastid	99.43	99.43
TraesCS5B01G162600.1	Wheat	plastid	99.43	99.43
TraesCS5A01G165700.1	Wheat	plastid	99.43	99.43
TraesCS5A01G165400.2	Wheat	plastid	99.43	99.43
HORVU5Hr1G033540.2	Barley	plastid	99.43	99.43
HORVU1Hr1G035720.2	Barley	plastid	96.57	96.02
HORVU2Hr1G010630.1	Barley	plastid	94.29	94.29
HORVU2Hr1G010690.1	Barley	plastid	94.29	94.29
HORVU2Hr1G010670.1	Barley	plastid	94.29	86.84
Os12t0291400-01	Rice	plastid	85.71	85.71
Os12t0291100-01	Rice	plastid	83.43	83.43
Os12t0292400-01	Rice	extracellular	83.43	83.43
Os12t0274700-01	Rice	plastid	82.29	82.29
Zm00001d052595_P001	Maize	plastid	74.86	77.06
Zm00001d004894_P001	Maize	plastid	74.86	77.06
EES09292	Sorghum	plastid	74.29	76.92
GSMUA_Achr8P18400_001	Banana	cytosol	11.43	76.92
HORVU5Hr1G050990.4	Barley	plastid	81.14	73.96
GSMUA_Achr10P...	Banana	plasma membrane	65.71	72.78
GSMUA_Achr6P09710_001	Banana	plastid	65.14	72.15
GSMUA_Achr2P22730_001	Banana	unclear	63.43	70.25
PGSC0003DMT400067905	Potato	plastid	63.43	69.81
PGSC0003DMT400032975	Potato	mitochondrion, plastid	67.43	65.56
Bra028181.1-P	Field mustard	plastid	58.29	62.96
PGSC0003DMT400062138	Potato	cytosol, plastid	64.57	62.43
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	64.57	62.43
AT1G67090.1	Thale cress	plastid	64.0	62.22
Solyc02g085950.2.1	Tomato	extracellular	64.0	62.22
Solyc02g063150.2.1	Tomato	nucleus, plastid	64.0	61.88
AT5G38420.1	Thale cress	plastid	64.0	61.88
Solyc03g034220.2.1	Tomato	plastid	63.43	61.67
KRG93867	Soybean	plastid	62.29	61.24
KRG93871	Soybean	plastid	62.29	61.24
KRH18247	Soybean	nucleus, plastid	62.29	61.24
AT5G38430.1	Thale cress	plastid	62.86	60.77
AT5G38410.3	Thale cress	plastid	64.57	60.75
Os12t0291200-00	Rice	plastid	33.14	60.42
CDY01665	Canola	plastid	61.71	59.67
CDY71122	Canola	plastid	61.71	59.67
CDY67657	Canola	plastid	61.71	59.67
Bra028174.1-P	Field mustard	plastid	61.71	59.67
CDY52468	Canola	plastid	61.71	59.67
VIT_17s0000g03690.t01	Wine grape	plastid	61.14	59.44
Bra034027.1-P	Field mustard	plastid	61.14	59.12
Bra034029.1-P	Field mustard	plastid	61.14	59.12
CDX74525	Canola	plastid	61.14	59.12
CDX67402	Canola	plastid	61.14	59.12
Bra025431.1-P	Field mustard	plastid	61.14	59.12
CDX74532	Canola	plastid	61.14	59.12
CDY01671	Canola	plastid	61.14	59.12
CDY42338	Canola	plastid	61.14	59.12
CDY12613	Canola	plastid	61.14	59.12
Bra028406.1-P	Field mustard	plastid	60.57	58.56
CDY12616	Canola	plastid	59.43	57.46
Bra034024.1-P	Field mustard	plastid	59.43	57.46
CDY42337	Canola	plastid	58.86	56.91
CDX99682	Canola	plastid	61.14	56.61
CDY12612	Canola	cytosol	38.86	56.2
CDY42341	Canola	plastid	57.71	54.3
KRG93872	Soybean	plastid	41.14	53.33
KRH46925	Soybean	plastid	26.29	51.11
KRG93873	Soybean	plastid	29.14	48.57
KRH01757	Soybean	plastid	41.14	48.0
HORVU7Hr1G048050.2	Barley	plastid	24.0	47.73
KRG99965	Soybean	plastid	32.57	43.51
KRG99964	Soybean	plastid	24.57	43.0
KRH15458	Soybean	plastid	32.0	35.22

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EMBL:AK354843	EMBL:AK358672
EMBL:AK358835	EMBL:AK369652	UniProt:F2CT91	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987
GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0019253
GO:GO:0055114	EnsemblPlantsGene:HORVU5Hr1G038630	EnsemblPlants:HORVU5Hr1G038630.1	InterPro:IPR036385	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf
SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0002004DA5	:	:	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:F2CT91]

Coordinates

chrchr5H:-:277205686..277206539

Molecular Weight (calculated)

19491.5 Da

IEP (calculated)

8.707

GRAVY (calculated)

-0.148

Length

175 amino acids

Sequence
(BLAST)

001: MAPTVMASSA TSVAPFQGLK STAGLPVSRR SNGASLGSVS NGGRIRCMQV WPIEGIKKFE TLSYLPPLST EALLKQVDYL IRSKWVPCLE FSKVGFIFRE
101: HNASPGYYDG RYWTMWKLPM FGCTDATQVL NEVEEVKKEY PDAYVRIIGF DNMRQVQCVS FIAFKPPGCE ESGKA

Best Arabidopsis Sequence Match ( AT5G38410.3 )
(BLAST)

001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS AAFPVTRKTN KDITSIASNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEVINTKHGF VYREHGNTPG YYDGRYWTMW KLPLFGCTDS AQVLKEVEEC KKEYPGAFIR IIGFDNTRQV QCISFIAYKP PSFTEA

Arabidopsis Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:B3H5S2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.