Factsheet for Bra034024.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12616	Canola	plastid	99.45	99.45
Bra034029.1-P	Field mustard	plastid	94.48	94.48
Bra034027.1-P	Field mustard	plastid	93.92	93.92
CDY42341	Canola	plastid	95.58	93.01
Bra028181.1-P	Field mustard	plastid	76.24	85.19
Bra028406.1-P	Field mustard	plastid	85.08	85.08
AT1G67090.1	Thale cress	plastid	84.53	85.0
Bra025431.1-P	Field mustard	plastid	84.53	84.53
Bra028174.1-P	Field mustard	plastid	82.87	82.87
GSMUA_Achr8P18400_001	Banana	cytosol	11.05	76.92
PGSC0003DMT400067905	Potato	plastid	61.88	70.44
GSMUA_Achr10P...	Banana	plasma membrane	60.77	69.62
GSMUA_Achr2P22730_001	Banana	unclear	60.77	69.62
GSMUA_Achr6P09710_001	Banana	plastid	59.67	68.35
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	66.85	66.85
PGSC0003DMT400062138	Potato	cytosol, plastid	66.85	66.85
Solyc03g034220.2.1	Tomato	plastid	66.3	66.67
PGSC0003DMT400032975	Potato	mitochondrion, plastid	66.3	66.67
VIT_17s0000g03690.t01	Wine grape	plastid	65.75	66.11
Solyc02g085950.2.1	Tomato	extracellular	65.19	65.56
Solyc02g063150.2.1	Tomato	nucleus, plastid	65.19	65.19
TraesCS2A01G067200.1	Wheat	plastid	58.01	60.0
KRH46925	Soybean	plastid	29.83	60.0
EES09292	Sorghum	plastid	55.8	59.76
HORVU1Hr1G035720.2	Barley	plastid	58.01	59.66
HORVU2Hr1G010690.1	Barley	plastid	57.46	59.43
HORVU2Hr1G010630.1	Barley	plastid	57.46	59.43
Os12t0291400-01	Rice	plastid	57.46	59.43
HORVU5Hr1G051010.2	Barley	plastid	57.46	59.43
HORVU5Hr1G038630.1	Barley	plastid	57.46	59.43
HORVU5Hr1G033540.2	Barley	plastid	57.46	59.43
TraesCS2D01G065500.1	Wheat	plastid	54.14	59.39
TraesCS2D01G065300.1	Wheat	plastid	56.91	59.2
TraesCS2B01G079300.1	Wheat	plastid	56.91	59.2
TraesCS2A01G066700.1	Wheat	plastid	56.91	59.2
Os12t0291100-01	Rice	plastid	56.91	58.86
TraesCS2D01G065200.1	Wheat	plastid	56.91	58.86
TraesCS2B01G079400.1	Wheat	plastid	56.91	58.86
TraesCS2B01G079200.1	Wheat	plastid	56.91	58.86
TraesCS2A01G067300.1	Wheat	plastid	56.91	58.86
TraesCS2D01G065600.1	Wheat	plastid	56.91	58.86
TraesCS5A01G165400.2	Wheat	plastid	56.91	58.86
TraesCS5D01G169900.2	Wheat	plastid	56.91	58.86
TraesCS5D01G169600.2	Wheat	plastid	56.91	58.86
TraesCS5B01G162800.1	Wheat	plastid	56.91	58.86
Os12t0292400-01	Rice	extracellular	56.91	58.86
TraesCS5B01G162600.1	Wheat	plastid	56.91	58.86
TraesCS5A01G165700.1	Wheat	plastid	56.91	58.86
Os12t0274700-01	Rice	plastid	56.91	58.86
Zm00001d004894_P001	Maize	plastid	55.25	58.82
TraesCS2B01G079100.1	Wheat	plastid	56.35	58.62
TraesCS2A01G066800.1	Wheat	plastid	56.35	58.29
TraesCS2A01G067100.1	Wheat	plastid	56.35	58.29
TraesCS2D01G065400.1	Wheat	plastid	56.35	58.29
Zm00001d052595_P001	Maize	plastid	54.7	58.24
TraesCS2D01G065100.2	Wheat	plastid	55.8	58.05
TraesCS2A01G067000.1	Wheat	plastid	55.25	57.14
TraesCS2B01G078900.2	Wheat	plastid	56.35	55.14
HORVU2Hr1G010670.1	Barley	plastid	57.46	54.74
TraesCS2A01G066900.1	Wheat	plastid	56.91	53.65
TraesCS2B01G079500.1	Wheat	plastid	56.91	53.37
KRH01757	Soybean	plastid	44.2	53.33
KRG99964	Soybean	plastid	26.52	48.0
KRG99965	Soybean	plastid	34.25	47.33
HORVU5Hr1G050990.4	Barley	plastid	48.62	45.83
Os12t0291200-00	Rice	plastid	22.65	42.71
KRH15458	Soybean	plastid	35.36	40.25
HORVU7Hr1G048050.2	Barley	plastid	16.57	34.09

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EnsemblPlantsGene:Bra034024	EnsemblPlants:Bra034024.1
EnsemblPlants:Bra034024.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829
GO:GO:0016984	GO:GO:0055114	InterPro:IPR036385	UniProt:M4EYY2	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI0002545D29	:	:

Description

AT5G38430 (E=2e-090) | ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B)

Coordinates

chrA02:-:10108723..10109557

Molecular Weight (calculated)

20383.6 Da

IEP (calculated)

8.567

GRAVY (calculated)

-0.146

Length

181 amino acids

Sequence
(BLAST)

001: MSSVMLSSAT IASSPSHATM VAPFIGLKSS AAFPVTCKAK TKITSITSNG GRVNCMKVWP PIGKKKFETL SYLPDLTDVE IAKEVDYLIR NKWTPCIEFE
101: LEHAFVYREH GNIPGYYDGR YWTMWKLPLF GCTDSSQVLK EVQECKKEYP NAFIRIIGFD NNRQAQCISF IAYKPLSFGD A

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.