Factsheet for HORVU1Hr1G035720.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU2Hr1G061320.3
HORVU2Hr1G067320.4
HORVU3Hr1G055550.3
HORVU3Hr1G106880.5
HORVU4Hr1G003360.1
HORVU4Hr1G003410.3
HORVU4Hr1G009730.1
HORVU4Hr1G087520.3
HORVU5Hr1G025740.13
HORVU5Hr1G060730.3
HORVU5Hr1G098570.6
HORVU6Hr1G069310.1
HORVU7Hr1G051710.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38420.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT5G38420.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT5G38420.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT5G38420.1	HORVU3Hr1G106880.5	AT2G41370.1	21798944
AT5G38420.1	HORVU2Hr1G067320.4	AT3G04240.1	21798944
AT5G38420.1	HORVU4Hr1G087520.3	AT3G17860.1	21798944
AT5G38420.1	HORVU5Hr1G060730.3	AT3G17860.1	21798944
AT5G38420.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G38420.1	HORVU2Hr1G061320.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003360.1	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G003410.3	AT4G08150.1	21798944
AT5G38420.1	HORVU4Hr1G009730.1	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G098570.6	AT4G08150.1	21798944
AT5G38420.1	HORVU5Hr1G025740.13	AT5G11980.1	21798944
AT5G38430.1	HORVU7Hr1G051710.1	AT2G39930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G051010.2	Barley	plastid	96.02	96.57
HORVU5Hr1G038630.1	Barley	plastid	96.02	96.57
HORVU5Hr1G033540.2	Barley	plastid	95.45	96.0
HORVU2Hr1G010690.1	Barley	plastid	92.61	93.14
HORVU2Hr1G010630.1	Barley	plastid	92.61	93.14
HORVU2Hr1G010670.1	Barley	plastid	92.61	85.79
Os12t0291400-01	Rice	plastid	83.52	84.0
Os12t0291100-01	Rice	plastid	81.25	81.71
Os12t0292400-01	Rice	extracellular	80.11	80.57
Os12t0274700-01	Rice	plastid	79.55	80.0
GSMUA_Achr8P18400_001	Banana	cytosol	11.36	76.92
Zm00001d052595_P001	Maize	plastid	72.73	75.29
Zm00001d004894_P001	Maize	plastid	72.73	75.29
EES09292	Sorghum	plastid	72.16	75.15
GSMUA_Achr10P...	Banana	plasma membrane	65.34	72.78
GSMUA_Achr6P09710_001	Banana	plastid	64.77	72.15
HORVU5Hr1G050990.4	Barley	plastid	77.27	70.83
GSMUA_Achr2P22730_001	Banana	unclear	63.07	70.25
PGSC0003DMT400067905	Potato	plastid	63.07	69.81
PGSC0003DMT400032975	Potato	mitochondrion, plastid	67.61	66.11
PGSC0003DMT400062138	Potato	cytosol, plastid	64.77	62.98
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	64.77	62.98
Bra028181.1-P	Field mustard	plastid	57.95	62.96
Solyc02g085950.2.1	Tomato	extracellular	64.2	62.78
AT1G67090.1	Thale cress	plastid	64.2	62.78
AT5G38420.1	Thale cress	plastid	64.2	62.43
Solyc02g063150.2.1	Tomato	nucleus, plastid	64.2	62.43
Solyc03g034220.2.1	Tomato	plastid	63.64	62.22
KRH18247	Soybean	nucleus, plastid	62.5	61.8
KRG93867	Soybean	plastid	62.5	61.8
KRG93871	Soybean	plastid	62.5	61.8
AT5G38430.1	Thale cress	plastid	63.07	61.33
AT5G38410.3	Thale cress	plastid	64.77	61.29
CDY71122	Canola	plastid	61.93	60.22
CDY67657	Canola	plastid	61.93	60.22
CDY52468	Canola	plastid	61.93	60.22
Bra028174.1-P	Field mustard	plastid	61.93	60.22
CDY01665	Canola	plastid	61.93	60.22
VIT_17s0000g03690.t01	Wine grape	plastid	61.36	60.0
Bra025431.1-P	Field mustard	plastid	61.36	59.67
Bra034027.1-P	Field mustard	plastid	61.36	59.67
Bra034029.1-P	Field mustard	plastid	61.36	59.67
CDX67402	Canola	plastid	61.36	59.67
CDX74525	Canola	plastid	61.36	59.67
CDY42338	Canola	plastid	61.36	59.67
CDY12613	Canola	plastid	61.36	59.67
CDY01671	Canola	plastid	61.36	59.67
CDX74532	Canola	plastid	61.36	59.67
Bra028406.1-P	Field mustard	plastid	60.8	59.12
Os12t0291200-00	Rice	plastid	31.82	58.33
Bra034024.1-P	Field mustard	plastid	59.66	58.01
CDY12616	Canola	plastid	59.66	58.01
CDY42337	Canola	plastid	59.09	57.46
CDX99682	Canola	plastid	61.36	57.14
CDY12612	Canola	cytosol	38.64	56.2
CDY42341	Canola	plastid	57.95	54.84
KRG93872	Soybean	plastid	41.48	54.07
KRH46925	Soybean	plastid	26.7	52.22
KRH01757	Soybean	plastid	41.48	48.67
HORVU7Hr1G048050.2	Barley	plastid	23.86	47.73
KRG93873	Soybean	plastid	28.41	47.62
KRG99965	Soybean	plastid	32.95	44.27
KRG99964	Soybean	plastid	25.0	44.0
KRH15458	Soybean	plastid	32.39	35.85

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	EMBL:AK359339	UniProt:F2D629
GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009853
GO:GO:0009987	GO:GO:0015977	GO:GO:0015979	GO:GO:0016491	GO:GO:0016829	GO:GO:0016984
GO:GO:0055114	EnsemblPlantsGene:HORVU1Hr1G035720	EnsemblPlants:HORVU1Hr1G035720.2	InterPro:IPR036385	PFAM:PF00101	PFAM:PF12338
PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N
InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI000200569E	:	:

Description

Ribulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:F2D629]

Coordinates

chrchr1H:-:238430875..238440536

Molecular Weight (calculated)

19473.6 Da

IEP (calculated)

8.460

GRAVY (calculated)

-0.073

Length

176 amino acids

Sequence
(BLAST)

001: MAPTVMSSAA TAVAPFQGLK STAGLPVSRL SGNAAGLGSV SNGGRIRCMQ VWPIEGIKKF ETLSYLPPLS TEALLKQVDY LIRSKWVPCL EFSKVGFIFR
101: EHNASPGYYD GRYWTMWKLP MFGCTDATQV LNEVEEVKKE YPDAYVRIIG FDNMRQVQCV SFIAFKPPGC EESGKA

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.