Factsheet for AT5G38420.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G38430.1	Thale cress	plastid	97.79	97.79
AT5G38410.3	Thale cress	plastid	96.69	94.09
Bra028174.1-P	Field mustard	plastid	92.27	92.27
CDY71122	Canola	plastid	92.27	92.27
Bra028181.1-P	Field mustard	plastid	82.32	91.98
CDX74532	Canola	plastid	91.71	91.71
CDY01671	Canola	plastid	91.71	91.71
CDY52468	Canola	plastid	91.71	91.71
CDX74525	Canola	plastid	91.16	91.16
CDY01665	Canola	plastid	91.16	91.16
AT1G67090.1	Thale cress	plastid	90.61	91.11
Bra025431.1-P	Field mustard	plastid	90.61	90.61
CDX67402	Canola	plastid	90.61	90.61
Bra028406.1-P	Field mustard	plastid	90.06	90.06
CDY67657	Canola	plastid	89.5	89.5
CDX99682	Canola	plastid	90.61	86.77
PGSC0003DMT400067905	Potato	plastid	67.96	77.36
GSMUA_Achr8P18400_001	Banana	cytosol	11.05	76.92
PGSC0003DMT400032975	Potato	mitochondrion, plastid	75.14	75.56
GSMUA_Achr10P...	Banana	plasma membrane	65.75	75.32
GSMUA_Achr2P22730_001	Banana	unclear	65.19	74.68
PGSC0003DMT400062138	Potato	cytosol, plastid	74.03	74.03
Solyc02g085950.2.1	Tomato	extracellular	73.48	73.89
GSMUA_Achr6P09710_001	Banana	plastid	64.09	73.42
Solyc03g034220.2.1	Tomato	plastid	72.93	73.33
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	72.38	72.38
Solyc02g063150.2.1	Tomato	nucleus, plastid	71.82	71.82
VIT_17s0000g03690.t01	Wine grape	plastid	70.72	71.11
KRH46925	Soybean	plastid	35.36	71.11
Os12t0291400-01	Rice	plastid	62.43	64.57
Os12t0274700-01	Rice	plastid	62.43	64.57
HORVU1Hr1G035720.2	Barley	plastid	62.43	64.2
HORVU5Hr1G051010.2	Barley	plastid	61.88	64.0
Os12t0292400-01	Rice	extracellular	61.88	64.0
Os12t0291100-01	Rice	plastid	61.88	64.0
HORVU5Hr1G038630.1	Barley	plastid	61.88	64.0
HORVU5Hr1G033540.2	Barley	plastid	61.88	64.0
HORVU2Hr1G010690.1	Barley	plastid	61.88	64.0
HORVU2Hr1G010630.1	Barley	plastid	61.88	64.0
TraesCS2B01G079300.1	Wheat	plastid	61.33	63.79
TraesCS2D01G065300.1	Wheat	plastid	61.33	63.79
TraesCS2A01G066700.1	Wheat	plastid	61.33	63.79
TraesCS2D01G065500.1	Wheat	plastid	58.01	63.64
Zm00001d004894_P001	Maize	plastid	59.67	63.53
TraesCS2B01G079200.1	Wheat	plastid	61.33	63.43
TraesCS5A01G165700.1	Wheat	plastid	61.33	63.43
TraesCS2A01G067300.1	Wheat	plastid	61.33	63.43
TraesCS2B01G079400.1	Wheat	plastid	61.33	63.43
TraesCS2D01G065200.1	Wheat	plastid	61.33	63.43
TraesCS2D01G065600.1	Wheat	plastid	61.33	63.43
TraesCS5D01G169900.2	Wheat	plastid	61.33	63.43
TraesCS5D01G169600.2	Wheat	plastid	61.33	63.43
TraesCS5B01G162800.1	Wheat	plastid	61.33	63.43
TraesCS5A01G165400.2	Wheat	plastid	61.33	63.43
TraesCS5B01G162600.1	Wheat	plastid	61.33	63.43
TraesCS2B01G079100.1	Wheat	plastid	60.77	63.22
Zm00001d052595_P001	Maize	plastid	59.12	62.94
TraesCS2A01G067200.1	Wheat	plastid	60.77	62.86
TraesCS2A01G067100.1	Wheat	plastid	60.77	62.86
TraesCS2D01G065400.1	Wheat	plastid	60.77	62.86
TraesCS2A01G066800.1	Wheat	plastid	60.77	62.86
TraesCS2D01G065100.2	Wheat	plastid	60.22	62.64
TraesCS2A01G067000.1	Wheat	plastid	59.67	61.71
KRH01757	Soybean	plastid	50.28	60.67
EES09292	Sorghum	plastid	56.35	60.35
HORVU2Hr1G010670.1	Barley	plastid	61.88	58.95
TraesCS2B01G078900.2	Wheat	plastid	60.22	58.92
KRG99964	Soybean	plastid	32.04	58.0
TraesCS2A01G066900.1	Wheat	plastid	61.33	57.81
TraesCS2B01G079500.1	Wheat	plastid	61.33	57.51
KRG99965	Soybean	plastid	40.33	55.73
HORVU5Hr1G050990.4	Barley	plastid	51.38	48.44
Os12t0291200-00	Rice	plastid	24.86	46.88
KRH15458	Soybean	plastid	40.33	45.91
HORVU7Hr1G048050.2	Barley	plastid	18.78	38.64

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	PDB:5IU0	EntrezGene:833828
EntrezGene:833829	EntrezGene:833830	ProteinID:AED94311.1	ProteinID:AED94312.1	ProteinID:AED94313.1	ProteinID:AED94314.1
ProteinID:AED94315.1	EMBL:AF360124	EMBL:AF410283	EMBL:AF410314	EMBL:AF462822	ProteinID:ANM69887.1
ArrayExpress:AT5G38420	EnsemblPlantsGene:AT5G38420	RefSeq:AT5G38420	TAIR:AT5G38420	RefSeq:AT5G38420-TAIR-G	EnsemblPlants:AT5G38420.1
TAIR:AT5G38420.1	EMBL:AY051025	EMBL:AY054552	EMBL:AY059939	EMBL:AY062437	EMBL:AY062458
EMBL:AY062543	EMBL:AY064686	EMBL:AY093288	EMBL:AY098970	EMBL:AY143814	Unigene:At.70032
ProteinID:BAB09353.1	ProteinID:BAB09354.1	ProteinID:BAB09355.1	EMBL:BT000721	EMBL:BT002094	EMBL:BT002554
EMBL:BT003356	ProteinID:CAA32700.1	ProteinID:CAA32701.1	ProteinID:CAA32702.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004497	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009628	GO:GO:0009637	GO:GO:0009853	GO:GO:0009941	GO:GO:0009987
GO:GO:0010114	GO:GO:0010218	GO:GO:0015977	GO:GO:0015979	GO:GO:0016020	GO:GO:0016491
GO:GO:0016829	GO:GO:0016984	GO:GO:0019253	GO:GO:0019904	GO:GO:0022626	GO:GO:0030312
GO:GO:0031969	GO:GO:0048046	GO:GO:0055114	GO:GO:0080158	InterPro:IPR036385	RefSeq:NP_001031981.1
RefSeq:NP_001119331.1	RefSeq:NP_001318696.1	RefSeq:NP_198657.1	RefSeq:NP_198658.1	RefSeq:NP_198659.1	ProteinID:OAO96413.1
UniProt:P10797	PFAM:PF00101	PFAM:PF12338	PO:PO:0000223	PO:PO:0000293	PO:PO:0005645
PO:PO:0006339	PO:PO:0009001	PO:PO:0009025	PO:PO:0009031	PO:PO:0009032	PO:PO:0020030
PO:PO:0020100	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom
InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961	SUPFAM:SSF55239	UniParc:UPI000000BD86	EMBL:Z18199

Description

RBCS-2BRibulose bisphosphate carboxylase small chain 2B, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10797]

Coordinates

chr5:-:15380907..15382071

Molecular Weight (calculated)

20351.3 Da

IEP (calculated)

7.834

GRAVY (calculated)

-0.212

Length

181 amino acids

Sequence
(BLAST)

001: MASSMFSSTA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLSDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTE A

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.