CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74635
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67090.1	CDX74635	AT5G35750.1	18642946
AT1G67090.1	CDY47297	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034027.1-P	Field mustard	plastid	100.0	100.0
CDY42337	Canola	plastid	93.37	93.37
CDY12616	Canola	plastid	93.37	93.37
CDY42338	Canola	plastid	92.82	92.82
CDX67402	Canola	plastid	89.5	89.5
CDY67657	Canola	plastid	88.4	88.4
CDY52468	Canola	plastid	88.4	88.4
AT1G67090.1	Thale cress	plastid	87.85	88.33
CDY42341	Canola	plastid	90.06	87.63
CDY71122	Canola	plastid	86.74	86.74
CDY01671	Canola	plastid	86.19	86.19
CDX74532	Canola	plastid	86.19	86.19
CDX74525	Canola	plastid	85.64	85.64
CDY01665	Canola	plastid	84.53	84.53
CDX99682	Canola	plastid	87.29	83.6
GSMUA_Achr8P18400_001	Banana	cytosol	11.05	76.92
CDY12612	Canola	cytosol	48.62	72.73
GSMUA_Achr10P...	Banana	plasma membrane	62.43	71.52
GSMUA_Achr2P22730_001	Banana	unclear	61.88	70.89
PGSC0003DMT400067905	Potato	plastid	61.88	70.44
GSMUA_Achr6P09710_001	Banana	plastid	60.77	69.62
PGSC0003DMT400062138	Potato	cytosol, plastid	67.96	67.96
PGSC0003DMT400032975	Potato	mitochondrion, plastid	67.4	67.78
VIT_17s0000g03690.t01	Wine grape	plastid	67.4	67.78
PGSC0003DMT400050381	Potato	cytosol, extracellular, plastid	67.4	67.4
Solyc03g034220.2.1	Tomato	plastid	66.85	67.22
Solyc02g085950.2.1	Tomato	extracellular	66.3	66.67
Solyc02g063150.2.1	Tomato	nucleus, plastid	66.3	66.3
TraesCS2A01G067200.1	Wheat	plastid	59.67	61.71
HORVU1Hr1G035720.2	Barley	plastid	59.67	61.36
HORVU5Hr1G033540.2	Barley	plastid	59.12	61.14
HORVU2Hr1G010630.1	Barley	plastid	59.12	61.14
Os12t0291400-01	Rice	plastid	59.12	61.14
Os12t0291100-01	Rice	plastid	59.12	61.14
Os12t0274700-01	Rice	plastid	59.12	61.14
HORVU2Hr1G010690.1	Barley	plastid	59.12	61.14
HORVU5Hr1G051010.2	Barley	plastid	59.12	61.14
HORVU5Hr1G038630.1	Barley	plastid	59.12	61.14
TraesCS2B01G079300.1	Wheat	plastid	58.56	60.92
TraesCS2D01G065300.1	Wheat	plastid	58.56	60.92
TraesCS2A01G066700.1	Wheat	plastid	58.56	60.92
TraesCS2D01G065500.1	Wheat	plastid	55.25	60.61
Zm00001d004894_P001	Maize	plastid	56.91	60.59
TraesCS2B01G079400.1	Wheat	plastid	58.56	60.57
TraesCS5A01G165700.1	Wheat	plastid	58.56	60.57
TraesCS2B01G079200.1	Wheat	plastid	58.56	60.57
TraesCS2D01G065200.1	Wheat	plastid	58.56	60.57
TraesCS2A01G067300.1	Wheat	plastid	58.56	60.57
TraesCS2D01G065600.1	Wheat	plastid	58.56	60.57
TraesCS5D01G169900.2	Wheat	plastid	58.56	60.57
TraesCS5D01G169600.2	Wheat	plastid	58.56	60.57
Os12t0292400-01	Rice	extracellular	58.56	60.57
TraesCS5B01G162800.1	Wheat	plastid	58.56	60.57
TraesCS5A01G165400.2	Wheat	plastid	58.56	60.57
TraesCS5B01G162600.1	Wheat	plastid	58.56	60.57
EES09292	Sorghum	plastid	56.35	60.35
TraesCS2B01G079100.1	Wheat	plastid	58.01	60.34
TraesCS2D01G065400.1	Wheat	plastid	58.01	60.0
Zm00001d052595_P001	Maize	plastid	56.35	60.0
TraesCS2A01G067100.1	Wheat	plastid	58.01	60.0
TraesCS2A01G066800.1	Wheat	plastid	58.01	60.0
KRH46925	Soybean	plastid	29.83	60.0
TraesCS2D01G065100.2	Wheat	plastid	57.46	59.77
TraesCS2A01G067000.1	Wheat	plastid	56.91	58.86
TraesCS2B01G078900.2	Wheat	plastid	58.01	56.76
HORVU2Hr1G010670.1	Barley	plastid	59.12	56.32
KRH01757	Soybean	plastid	45.86	55.33
TraesCS2A01G066900.1	Wheat	plastid	58.56	55.21
TraesCS2B01G079500.1	Wheat	plastid	58.56	54.92
KRG99965	Soybean	plastid	34.81	48.09
KRG99964	Soybean	plastid	26.52	48.0
HORVU5Hr1G050990.4	Barley	plastid	49.72	46.88
Os12t0291200-00	Rice	plastid	23.76	44.79
KRH15458	Soybean	plastid	34.81	39.62
HORVU7Hr1G048050.2	Barley	plastid	17.13	35.23

Protein Annotations

KEGG:00630+4.1.1.39	KEGG:00710+4.1.1.39	MapMan:1.2.1.1.2	Gene3D:3.30.190.10	GO:A0A078FKE5	UniProt:A0A078FKE5
EnsemblPlants:CDY12613	ProteinID:CDY12613	ProteinID:CDY12613.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009853	GO:GO:0009987	GO:GO:0015977	GO:GO:0015979
GO:GO:0016491	GO:GO:0016829	GO:GO:0016984	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00070115001	InterPro:IPR036385
PFAM:PF00101	PFAM:PF12338	PRINTS:PR00152	PANTHER:PTHR31262	PANTHER:PTHR31262:SF0	MetaCyc:PWY-5532
MetaCyc:PWY-5723	InterPro:RuBisCO_sc	InterPro:RuBisCO_sc_dom	InterPro:RuBisCO_ssu_N	InterPro:RuBisCO_ssu_sf	SMART:SM00961
SUPFAM:SSF55239	UniParc:UPI0002545D26	:	:	:	:

Description

BnaA02g12810DRibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A078FKE5]

Coordinates

chrLK032025:-:210546..211573

Molecular Weight (calculated)

20324.5 Da

IEP (calculated)

8.568

GRAVY (calculated)

-0.162

Length

181 amino acids

Sequence
(BLAST)

001: MASVMLSSAT MASSPAHATM VAPFIGLKSS AAFPVTCKAN TKVTSITSNG GRVNCMKVWP PVGKKKFETL SYLPDLTDVE IAKEVDYLIR NKWTPCIEFE
101: LEHGFVYREH GNIPGYYDGR YWTMWKLPLF GCTDSAQVLK EVQECKKEYP NAFIRIIGFD NNRQAQCISF IAYKPPSFTN A

Best Arabidopsis Sequence Match ( AT1G67090.1 )
(BLAST)

001: MASSMLSSAT MVASPAQATM VAPFNGLKSS AAFPATRKAN NDITSITSNG GRVNCMQVWP PIGKKKFETL SYLPDLTDSE LAKEVDYLIR NKWIPCVEFE
101: LEHGFVYREH GNSPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP NAFIRIIGFD NTRQVQCISF IAYKPPSFTG

Arabidopsis Description

RBCS-1ARibulose bisphosphate carboxylase small chain [Source:UniProtKB/TrEMBL;Acc:A0A178WD57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.