Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G058000.1 | Wheat | nucleus | 87.26 | 87.02 |
| TraesCS4A01G256700.1 | Wheat | nucleus | 87.26 | 87.02 |
| TraesCS4B01G057900.1 | Wheat | nucleus | 87.26 | 86.78 |
| HORVU4Hr1G009730.1 | Barley | nucleus | 86.43 | 85.71 |
| Os03t0673000-00 | Rice | nucleus | 17.73 | 83.12 |
| Zm00001d033859_P002 | Maize | nucleus | 82.27 | 82.73 |
| EER90950 | Sorghum | nucleus | 81.72 | 81.94 |
| CDY34012 | Canola | nucleus | 37.95 | 70.98 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 66.2 | 68.29 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 59.83 | 67.08 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 51.52 | 64.14 |
| Solyc04g077210.2.1 | Tomato | nucleus | 54.57 | 55.49 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 56.51 | 55.14 |
| Os07t0129700-01 | Rice | nucleus | 53.74 | 54.65 |
| PGSC0003DMT400012712 | Potato | nucleus | 54.29 | 54.44 |
| KRH15482 | Soybean | nucleus | 57.06 | 53.51 |
| KRH61471 | Soybean | nucleus | 53.19 | 53.19 |
| KRG88661 | Soybean | nucleus | 56.51 | 52.71 |
| AT4G08150.1 | Thale cress | nucleus | 55.12 | 50.0 |
| Bra000638.1-P | Field mustard | nucleus | 53.19 | 49.61 |
| CDX83145 | Canola | nucleus | 53.19 | 47.76 |
| Os03t0771500-01 | Rice | nucleus | 42.38 | 45.54 |
| Os01t0302500-01 | Rice | nucleus | 35.73 | 42.86 |
| Os03t0727200-00 | Rice | nucleus | 43.21 | 42.74 |
| CDY68624 | Canola | nucleus | 39.34 | 40.69 |
| Os05t0129700-01 | Rice | nucleus | 34.9 | 40.51 |
| Os03t0673500-00 | Rice | nucleus | 36.57 | 38.37 |
| Os08t0292900-01 | Rice | nucleus, plasma membrane | 20.78 | 35.55 |
| Os06t0646600-01 | Rice | nucleus | 27.15 | 30.34 |
| Os02t0182800-01 | Rice | nucleus | 25.21 | 29.07 |
| Os03t0772100-00 | Rice | vacuole | 32.41 | 28.12 |
| Os03t0123500-02 | Rice | nucleus | 22.44 | 25.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | EntrezGene:4333973 | ProteinID:AAS07158.1 | ProteinID:ABF98651.1 | ProteinID:ABF98652.1 |
| ProteinID:ABF98653.1 | ProteinID:BAF13053.2 | ProteinID:BAS86183.1 | EMBL:D16507 | UniProt:D6BV17 | InterPro:ELK_dom |
| EMBL:FJ940206 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 |
| InterPro:KNOX1 | InterPro:KNOX2 | EnsemblPlantsGene:Os03g0727000 | EnsemblPlants:Os03t0727000-02 | UniProt:P46609 | PFAM:PF03789 |
| PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI000017A30B | RefSeq:XP_015629392.1 | SEG:seg | : | : |
Description
HOMEOBOX 1Similar to Homeobox protein. (Os03t0727000-01);Knotted1-like homeobox protein, Shoot apical meristem maintenance, Embryogenesis (Os03t0727000-02)
Coordinates
chr3:-:29596367..29606861
Molecular Weight (calculated)
39900.2 Da
IEP (calculated)
6.867
GRAVY (calculated)
-0.515
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEISHHFGV VGASGVHGGH QHQHHHHPWG SSLSAIVAPP PPPQLQQQQT QAGGMAHTPL TLNTAAAAVG NPVLQLANGS LLDACGKAKE ASASASYAAD
101: VEAIKAKIIS HPHYSSLLAA YLDCQKVGAP PEVAARLTAV AQDLELRQRT ALGVLGAATE PELDQFMEAY HEMLVKYREE LTRPLQEAME FLRRVETQLN
201: TLSISGRSLR NILSSGSSEE DQEGSGGETE LPEIDAHGVD QELKHHLLKK YSGYLSSLKQ ELSKKKKKGK LPKDARQQLL NWWELHYKWP YPSESQKVAL
301: AESTGLDLKQ INNWFINQRK RHWKPSDEMQ FVMMDGYHPT NAAAFYMDGH FINDGGLYRL G
101: VEAIKAKIIS HPHYSSLLAA YLDCQKVGAP PEVAARLTAV AQDLELRQRT ALGVLGAATE PELDQFMEAY HEMLVKYREE LTRPLQEAME FLRRVETQLN
201: TLSISGRSLR NILSSGSSEE DQEGSGGETE LPEIDAHGVD QELKHHLLKK YSGYLSSLKQ ELSKKKKKGK LPKDARQQLL NWWELHYKWP YPSESQKVAL
301: AESTGLDLKQ INNWFINQRK RHWKPSDEMQ FVMMDGYHPT NAAAFYMDGH FINDGGLYRL G
001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
Arabidopsis Description
KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.