Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G057900.1 | Wheat | nucleus | 100.0 | 99.72 |
| TraesCS4A01G256700.1 | Wheat | nucleus | 99.72 | 99.72 |
| HORVU4Hr1G009730.1 | Barley | nucleus | 97.79 | 97.25 |
| Os03t0727000-02 | Rice | nucleus | 87.02 | 87.26 |
| Zm00001d033859_P002 | Maize | nucleus | 79.56 | 80.22 |
| EER90950 | Sorghum | nucleus | 78.45 | 78.89 |
| CDY34012 | Canola | nucleus | 36.46 | 68.39 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 64.64 | 66.86 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 57.73 | 64.91 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 50.83 | 63.45 |
| Solyc04g077210.2.1 | Tomato | nucleus | 53.04 | 54.08 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 54.7 | 53.51 |
| PGSC0003DMT400012712 | Potato | nucleus | 53.04 | 53.33 |
| KRH15482 | Soybean | nucleus | 56.35 | 52.99 |
| KRH61471 | Soybean | nucleus | 52.76 | 52.91 |
| KRG88661 | Soybean | nucleus | 56.08 | 52.45 |
| TraesCS2D01G256400.1 | Wheat | nucleus | 50.0 | 52.16 |
| AT4G08150.1 | Thale cress | nucleus | 54.14 | 49.25 |
| Bra000638.1-P | Field mustard | nucleus | 51.93 | 48.58 |
| TraesCS5D01G415900.1 | Wheat | nucleus | 44.75 | 47.79 |
| CDX83145 | Canola | nucleus | 51.93 | 46.77 |
| TraesCS4D01G019600.1 | Wheat | nucleus | 40.06 | 42.65 |
| TraesCS1D01G075700.1 | Wheat | nucleus | 35.08 | 41.5 |
| CDY68624 | Canola | nucleus | 39.23 | 40.69 |
| TraesCS4D01G019800.1 | Wheat | nucleus | 36.19 | 40.68 |
| TraesCS4D01G019900.1 | Wheat | nucleus | 35.36 | 39.26 |
| TraesCS1D01G075600.1 | Wheat | nucleus | 32.32 | 38.24 |
| TraesCS6D01G134800.1 | Wheat | nucleus | 18.51 | 32.37 |
| TraesCS7D01G501000.1 | Wheat | nucleus | 25.14 | 29.45 |
| TraesCS4D01G341000.1 | Wheat | nucleus | 22.1 | 25.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 |
| PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 |
| SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS4D01G058000 |
| EnsemblPlants:TraesCS4D01G058000.1 | TIGR:cd00086 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4D:-:32939863..32947102
Molecular Weight (calculated)
40067.2 Da
IEP (calculated)
6.764
GRAVY (calculated)
-0.580
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIGHHFGL GATAHGQHHS QLPWGSSPLS AVIAPPPQQQ QQQQSAGYLA HSPLSLNTAP PSGSHGGGSG CSNPVLQLAN GSLLEACAKA AKEPSSSSYA
101: ADVEAIKAKI ISHPHYSSLL AAYLDCQKVG APPEVLARLT AVAQDLELRQ RTALGSLGTA TEPELDQFME AYHEMLVKYR EELTRPLQEA MEFLRRVETQ
201: LNSLSISGRS LRNILSSGSS EEDQEGSGGE TELPEIDAHG VDQELKHHLL KKYSGYLSSL KQELSKKKKK GKLPKDARQQ LLSWWEMHYK WPYPSESQKV
301: ALAESTGLDL KQINNWFINQ RKRHWKPSDE MQFVMMDAYH PPNAAFYMDG HFVNDSGLYR FG
101: ADVEAIKAKI ISHPHYSSLL AAYLDCQKVG APPEVLARLT AVAQDLELRQ RTALGSLGTA TEPELDQFME AYHEMLVKYR EELTRPLQEA MEFLRRVETQ
201: LNSLSISGRS LRNILSSGSS EEDQEGSGGE TELPEIDAHG VDQELKHHLL KKYSGYLSSL KQELSKKKKK GKLPKDARQQ LLSWWEMHYK WPYPSESQKV
301: ALAESTGLDL KQINNWFINQ RKRHWKPSDE MQFVMMDAYH PPNAAFYMDG HFVNDSGLYR FG
001: MEEYQHDNST TPQRVSFLYS PISSSNKNDN TSDTNNNNNN NNSSNYGPGY NNTNNNNHHH QHMLFPHMSS LLPQTTENCF RSDHDQPNNN NNPSVKSEAS
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
101: SSRINHYSML MRAIHNTQEA NNNNNDNVSD VEAMKAKIIA HPHYSTLLQA YLDCQKIGAP PDVVDRITAA RQDFEARQQR STPSVSASSR DPELDQFMEA
201: YCDMLVKYRE ELTRPIQEAM EFIRRIESQL SMLCQSPIHI LNNPDGKSDN MGSSDEEQEN NSGGETELPE IDPRAEDREL KNHLLKKYSG YLSSLKQELS
301: KKKKKGKLPK EARQKLLTWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV MDGLQHPHHA ALYMDGHYMG DGPYRLGP
Arabidopsis Description
KNAT1Homeobox protein knotted-1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:P46639]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.