Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G230200.1 | Wheat | plastid | 96.07 | 96.07 |
| TraesCS6A01G248100.1 | Wheat | plastid | 95.0 | 96.03 |
| HORVU6Hr1G063400.2 | Barley | plastid | 91.43 | 91.1 |
| Zm00001d017504_P001 | Maize | mitochondrion | 75.71 | 72.35 |
| Os02t0661600-00 | Rice | mitochondrion | 75.71 | 69.28 |
| KXG31078 | Sorghum | plastid | 73.93 | 65.51 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 45.71 | 50.39 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 48.93 | 47.9 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 46.79 | 47.46 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 45.36 | 47.39 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 48.57 | 46.1 |
| Solyc08g079010.1.1 | Tomato | cytosol | 25.36 | 44.94 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 45.0 | 44.52 |
| AT4G12450.1 | Thale cress | cytosol | 41.07 | 41.52 |
| CDY63658 | Canola | cytosol | 41.07 | 41.37 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 43.57 | 41.36 |
| CDY42181 | Canola | cytosol | 37.86 | 41.09 |
| Bra029455.1-P | Field mustard | cytosol | 40.71 | 41.01 |
| CDY16714 | Canola | cytosol | 40.71 | 41.01 |
| Bra020842.1-P | Field mustard | cytosol | 37.5 | 40.7 |
| CDX76365 | Canola | cytosol | 37.5 | 40.7 |
| KRH77393 | Soybean | mitochondrion | 40.71 | 40.14 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 40.71 | 39.86 |
| KRH28045 | Soybean | mitochondrion | 40.36 | 39.65 |
| TraesCS1B01G224700.1 | Wheat | mitochondrion, plastid | 41.07 | 39.25 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 36.79 | 39.02 |
| AT1G62520.1 | Thale cress | nucleus | 38.57 | 38.57 |
| PGSC0003DMT400012224 | Potato | nucleus | 40.36 | 37.79 |
| TraesCS4B01G369900.1 | Wheat | plastid | 42.14 | 37.7 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 35.36 | 37.5 |
| CDY19564 | Canola | nucleus | 35.36 | 37.5 |
| CDY12954 | Canola | nucleus | 35.36 | 37.5 |
| KRH04088 | Soybean | cytosol | 37.5 | 36.08 |
| KRH57359 | Soybean | cytosol | 36.43 | 35.66 |
| KRH37293 | Soybean | plastid | 14.29 | 25.97 |
| TraesCS4B01G214400.1 | Wheat | golgi | 28.57 | 18.48 |
| TraesCS4B01G111000.1 | Wheat | nucleus | 28.21 | 18.08 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 28.93 | 16.67 |
| TraesCS2B01G627700.1 | Wheat | nucleus | 28.21 | 15.99 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G276600.1 | EnsemblPlantsGene:TraesCS6B01G276600 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF12 | SEG:seg |
| SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:500522562..500523404
Molecular Weight (calculated)
29269.0 Da
IEP (calculated)
10.760
GRAVY (calculated)
-0.240
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEKPPPLGR RPTASASWVR SLHCKSMAAD DVAANVAALP KKSHLLLRSS CASSGDAQRD VSSCKPKLKS SSKTSSATKK PKAAKSTSVP PSPPLSPLGP
101: LPALTELPAG HSSRQVVEII FLSSWSPLPP APAAHAGGAF SGEVEMLFRV HNQARAVARF EDYRAAVRAR AGGASRSAAD GNEMMRFSPA PPHGCSSSDS
201: ASLRVVRTFD GSGGAHASGR GPQTGRRAMF LCRVIAGRVA EGACSEAAGK EYDSVRGGKG ELVVFDRRAV LPCFLIIYKL
101: LPALTELPAG HSSRQVVEII FLSSWSPLPP APAAHAGGAF SGEVEMLFRV HNQARAVARF EDYRAAVRAR AGGASRSAAD GNEMMRFSPA PPHGCSSSDS
201: ASLRVVRTFD GSGGAHASGR GPQTGRRAMF LCRVIAGRVA EGACSEAAGK EYDSVRGGKG ELVVFDRRAV LPCFLIIYKL
001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
Arabidopsis Description
Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.