Factsheet for GSMUA_Achr4P27010_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P25070_001
GSMUA_Achr7P14150_001
GSMUA_Achr7P27170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	GSMUA_Achr7P27170_001	AT1G05410.1	21798944
AT4G12450.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT4G12450.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15290_001	Banana	nucleus	75.17	84.65
GSMUA_Achr1P01700_001	Banana	nucleus	78.67	76.27
GSMUA_Achr2P10020_001	Banana	cytosol	67.83	72.39
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	73.43	71.19
GSMUA_Achr4P30380_001	Banana	cytosol	70.28	71.02
GSMUA_Achr7P07110_001	Banana	cytosol	62.24	64.49
Os10t0554001-01	Rice	cytosol	38.11	59.89
TraesCS5A01G536800.1	Wheat	cytosol	35.31	52.6
TraesCS6A01G248100.1	Wheat	plastid	48.6	50.18
TraesCS6D01G230200.1	Wheat	plastid	48.6	49.64
HORVU6Hr1G063400.2	Barley	plastid	48.25	49.11
TraesCS6B01G276600.1	Wheat	plastid	47.9	48.93
CDY42181	Canola	cytosol	43.36	48.06
Zm00001d017504_P001	Maize	mitochondrion	48.95	47.78
CDX76365	Canola	cytosol	43.01	47.67
Bra020842.1-P	Field mustard	cytosol	43.01	47.67
Solyc08g079010.1.1	Tomato	cytosol	26.22	47.47
KRH28045	Soybean	mitochondrion	46.85	47.02
AT4G22560.1	Thale cress	cytosol, plastid	43.36	46.97
VIT_02s0154g00220.t01	Wine grape	cytosol	46.85	46.85
KRH77393	Soybean	mitochondrion	46.5	46.83
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	47.2	46.08
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	46.5	46.02
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	46.85	45.73
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	46.85	45.58
CDY63658	Canola	cytosol	44.06	45.32
CDY16714	Canola	cytosol	44.06	45.32
Bra029455.1-P	Field mustard	cytosol	44.06	45.32
AT4G12450.1	Thale cress	cytosol	43.71	45.13
Os02t0661600-00	Rice	mitochondrion	47.55	44.44
KRH57359	Soybean	cytosol	44.06	44.06
KXG31078	Sorghum	plastid	48.6	43.99
AT1G62520.1	Thale cress	nucleus	43.01	43.93
Zm00001d047106_P001	Maize	plastid	45.45	43.92
Bra027038.1-P	Field mustard	cytosol, plastid	40.21	43.56
CDY12954	Canola	nucleus	40.21	43.56
KRH04088	Soybean	cytosol	44.06	43.3
CDY19564	Canola	nucleus	39.86	43.18
Zm00001d029869_P001	Maize	mitochondrion	46.15	43.0
KXG38947	Sorghum	mitochondrion	47.9	42.81
PGSC0003DMT400012224	Potato	nucleus	43.01	41.14
TraesCS4D01G361200.1	Wheat	plastid	42.66	39.61
TraesCS4B01G369900.1	Wheat	plastid	42.66	38.98
GSMUA_Achr11P...	Banana	nucleus	28.32	31.15
GSMUA_Achr6P19070_001	Banana	cytosol	14.34	31.06
KRH37293	Soybean	plastid	15.38	28.57
GSMUA_Achr6P17990_001	Banana	nucleus	24.83	27.63
GSMUA_Achr7P19590_001	Banana	cytosol	8.04	26.74
GSMUA_Achr11P...	Banana	cytosol	24.48	25.93
GSMUA_Achr9P00350_001	Banana	nucleus	24.83	24.91
GSMUA_AchrUn_...	Banana	cytosol	29.37	23.33
GSMUA_Achr6P24320_001	Banana	cytosol	26.92	22.85
GSMUA_Achr8P19240_001	Banana	nucleus	33.22	22.51
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	25.52	22.05
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	29.37	21.82
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	27.97	21.56
GSMUA_Achr9P29950_001	Banana	cytosol	27.97	21.33
GSMUA_Achr8P30300_001	Banana	nucleus	28.67	21.24
GSMUA_Achr9P24720_001	Banana	cytosol	26.57	21.05
GSMUA_Achr11P...	Banana	nucleus	33.22	20.7
GSMUA_Achr1P08590_001	Banana	nucleus	29.72	20.38
GSMUA_Achr6P19060_001	Banana	nucleus	12.94	16.37

Protein Annotations

EnsemblPlants:GSMUA_Achr4P27010_001	EnsemblPlants:GSMUA_Achr4T27010_001	EnsemblPlantsGene:GSMUA_Achr4G27010_001	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12
SEG:seg	SUPFAM:SSF56399	UniParc:UPI000294B70D	UniProt:M0SSG3	MapMan:15.5.15	:

Description

zinc finger protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G27010_001]

Coordinates

chr4:+:26024298..26025158

Molecular Weight (calculated)

30014.7 Da

IEP (calculated)

10.071

GRAVY (calculated)

-0.138

Length

286 amino acids

Sequence
(BLAST)

001: MAAGWVKSLH CKSNAVDDVV YNRTPSSSSS ARKPLLSSVS CSNTSHAIKD VFLFPKYLSS SASSSSSLPK KPRPKARPKS KPKPTSARPP ASPAAGLVGP
101: AHADPFPTLA ELPTGHSSRR VVEIIFSSSW SSSGGRPAAA FPGEIEMLFR VHNPARTVAR FEEHRAAVRA RSDDARCAAD GNEMMRFHCG VGGGVVYDAG
201: VACSAVWSAG GKVEGVRTFA GSGGAHASGG GGTGRRAMLV CRVIAGRVKA EFDTESEAES VTLENGELVV FDLRAVLPCF LIIYKL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.