Factsheet for GSMUA_Achr9P00350_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P17990_001	Banana	nucleus	58.95	65.37
GSMUA_Achr11P...	Banana	cytosol	61.75	65.19
PGSC0003DMT400074652	Potato	plastid	61.05	54.04
GSMUA_Achr11P...	Banana	nucleus	48.07	52.69
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	60.7	52.27
GSMUA_Achr5P01120_001	Banana	nucleus, plastid	66.32	49.09
GSMUA_Achr7P19590_001	Banana	cytosol	14.74	48.84
GSMUA_Achr8P30300_001	Banana	nucleus	65.26	48.19
Solyc11g013220.1.1	Tomato	nucleus	61.75	43.67
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	51.23	43.32
GSMUA_Achr6P19070_001	Banana	cytosol	19.65	42.42
KRH64726	Soybean	nucleus	62.81	42.02
KRH53192	Soybean	nucleus	61.75	41.61
VIT_18s0001g03670.t01	Wine grape	nucleus	64.56	37.63
Os11t0169400-01	Rice	nucleus	53.68	36.0
Zm00001d053006_P001	Maize	nucleus	53.33	35.85
KXG27839	Sorghum	nucleus, plastid	56.14	35.56
TraesCS4A01G207500.1	Wheat	nucleus	53.68	35.25
TraesCS4D01G108700.1	Wheat	nucleus	54.04	35.24
TraesCS4B01G111000.1	Wheat	nucleus	53.68	35.01
HORVU4Hr1G019890.1	Barley	nucleus	52.63	34.88
GSMUA_Achr8P19240_001	Banana	nucleus	46.67	31.52
GSMUA_Achr11P...	Banana	nucleus	50.18	31.15
GSMUA_Achr6P24320_001	Banana	cytosol	36.49	30.86
GSMUA_Achr9P29950_001	Banana	cytosol	38.6	29.33
GSMUA_Achr5P15290_001	Banana	nucleus	25.96	29.13
Zm00001d004822_P001	Maize	nucleus, plastid	35.44	28.94
GSMUA_AchrUn_...	Banana	cytosol	36.49	28.89
GSMUA_Achr1P08590_001	Banana	nucleus	42.11	28.78
GSMUA_Achr9P24720_001	Banana	cytosol	36.14	28.53
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	35.79	27.49
GSMUA_Achr2P10020_001	Banana	cytosol	24.21	25.75
GSMUA_Achr7P07110_001	Banana	cytosol	24.56	25.36
GSMUA_Achr4P30380_001	Banana	cytosol	24.91	25.09
GSMUA_Achr1P01700_001	Banana	nucleus	25.96	25.08
GSMUA_Achr4P27010_001	Banana	plastid	24.91	24.83
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	23.51	22.71
GSMUA_Achr6P19060_001	Banana	nucleus	12.98	16.37

Protein Annotations

EnsemblPlants:GSMUA_Achr9P00350_001	EnsemblPlants:GSMUA_Achr9T00350_001	EnsemblPlantsGene:GSMUA_Achr9G00350_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PFscan:PS50157
ScanProsite:PS00028	SUPFAM:SSF56399	UniParc:UPI000296D7A7	UniProt:M0TW92	MapMan:15.5.15	:

Description

ZOS4-14 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G00350_001]

Coordinates

chr9:-:352474..354317

Molecular Weight (calculated)

31853.6 Da

IEP (calculated)

8.282

GRAVY (calculated)

-0.185

Length

285 amino acids

Sequence
(BLAST)

001: MHRRRLYGCY ECHMVVDPIS MLSRDSSLGT TICTCPDCGE IFVKAESLEI HQAVRHAVSE LGPEDTSRNI VEIIFQSSWL KKQTPVCKID RILKVHNTNR
101: TLTRFEDYRD SIKIKASKLA RKHPRCTADG NELLRFHCTT FMCSIGLDGA TNLCNSIPKC SLCSIVRDGF KIDSHGRIGT MATSGRAHDA ADNVSDKTAM
201: LVCRVIAGRV KRKQDDLEEY DSAAGMAGIY SNLDELFVFD PKAILPCFVL PLLKLSSNRM TYVASDIAPK TKAVIQLVQK EQPYC

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.