Factsheet for GSMUA_Achr5P01120_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P17990_001	Banana	nucleus	44.42	66.54
GSMUA_Achr9P00350_001	Banana	nucleus	49.09	66.32
GSMUA_Achr11P...	Banana	cytosol	45.19	64.44
GSMUA_Achr2P08150_001	Banana	nucleus, plastid	53.77	62.54
GSMUA_Achr8P30300_001	Banana	nucleus	56.36	56.22
GSMUA_Achr11P...	Banana	nucleus	37.66	55.77
PGSC0003DMT400074652	Potato	plastid	45.71	54.66
VIT_18s0001g02000.t01	Wine grape	nucleus, plastid	43.64	49.85
KRH64726	Soybean	nucleus	54.55	49.3
KRH53192	Soybean	nucleus	52.99	48.23
Solyc11g013220.1.1	Tomato	nucleus	49.35	47.15
GSMUA_Achr7P19590_001	Banana	cytosol	10.13	45.35
VIT_18s0001g03670.t01	Wine grape	nucleus	57.14	44.99
Os11t0169400-01	Rice	nucleus	46.49	42.12
GSMUA_Achr6P19070_001	Banana	cytosol	14.03	40.91
TraesCS4B01G111000.1	Wheat	nucleus	45.71	40.27
TraesCS4A01G207500.1	Wheat	nucleus	45.19	40.09
TraesCS4D01G108700.1	Wheat	nucleus	45.45	40.05
HORVU4Hr1G019890.1	Barley	nucleus	44.68	40.0
KXG27839	Sorghum	nucleus, plastid	46.23	39.56
Zm00001d053006_P001	Maize	nucleus	43.38	39.39
GSMUA_Achr8P19240_001	Banana	nucleus	40.78	37.2
GSMUA_Achr11P...	Banana	nucleus	41.82	35.08
Zm00001d004822_P001	Maize	nucleus, plastid	31.43	34.67
GSMUA_Achr6P24320_001	Banana	cytosol	29.09	33.23
GSMUA_Achr1P08590_001	Banana	nucleus	35.06	32.37
GSMUA_AchrUn_...	Banana	cytosol	30.13	32.22
GSMUA_Achr5P15290_001	Banana	nucleus	21.04	31.89
GSMUA_Achr9P29950_001	Banana	cytosol	30.91	31.73
GSMUA_Achr9P24720_001	Banana	cytosol	29.61	31.58
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	29.09	30.19
GSMUA_Achr4P27010_001	Banana	plastid	21.82	29.37
GSMUA_Achr7P07110_001	Banana	cytosol	21.04	29.35
GSMUA_Achr1P01700_001	Banana	nucleus	22.08	28.81
GSMUA_Achr2P10020_001	Banana	cytosol	20.0	28.73
GSMUA_Achr4P30380_001	Banana	cytosol	21.04	28.62
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	21.3	27.8
GSMUA_Achr6P19060_001	Banana	nucleus	12.73	21.68

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01120_001	EnsemblPlants:GSMUA_Achr5T01120_001	EnsemblPlantsGene:GSMUA_Achr5G01120_001	Gene3D:3.90.228.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR31681	PANTHER:PTHR31681:SF21	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SUPFAM:SSF56399	UniParc:UPI00029635C7	UniProt:M0SUP1	MapMan:15.5.15

Description

ZOS4-14 - C2H2 zinc finger protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G01120_001]

Coordinates

chr5:+:651400..652753

Molecular Weight (calculated)

42160.5 Da

IEP (calculated)

9.613

GRAVY (calculated)

-0.371

Length

385 amino acids

Sequence
(BLAST)

001: MAAETGRLNE PIKQTQRVAA CPSSAGSLRG FFSCERRRAG EVRKSRRKRM GCSGSFCRSK DLQRPEASLP EPCKRRASVS GRTATERSRK MPLTEINNAV
101: STPLASVAVS PASVAVSSSS SPLGGSFRGM NLGRLSGCYE CHMVVDPING TPRYSSVRAT ISSCPDCGEI FMKADSLELH QAVRHAVSEL GPEDTGRKIV
201: EIIFQSSWLK KRTPACRIER ILKVHNTSKT MARFEDYRDS IKSKASKLAK RHPRSTADGN ELLRFHCTTF RCTLGLNGAT NLCDSIPQCS LCSIIRDGFK
301: ADAAGSIRTM ATSGRAHDAE HVTSENERIA MLVCRVIAGR VRRSQEAEEE YDSAAGITGA HSNLDEMFVF NPKAILPCFV VIYRC

Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)

001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES

Arabidopsis Description

C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.