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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G108700.1 Wheat nucleus 91.86 90.39
TraesCS4A01G207500.1 Wheat nucleus 90.93 90.09
TraesCS4B01G111000.1 Wheat nucleus 90.47 89.02
Os11t0169400-01 Rice nucleus 57.21 57.88
Zm00001d053006_P001 Maize nucleus 55.35 56.13
KXG27839 Sorghum nucleus, plastid 58.14 55.56
HORVU2Hr1G125620.2 Barley nucleus 12.56 53.47
GSMUA_Achr9P00350_001 Banana nucleus 34.88 52.63
Zm00001d004822_P001 Maize nucleus, plastid 39.53 48.71
PGSC0003DMT400074652 Potato plastid 36.05 48.14
GSMUA_Achr5P01120_001 Banana nucleus, plastid 40.0 44.68
KRH64726 Soybean nucleus 41.63 42.02
Solyc11g013220.1.1 Tomato nucleus 39.07 41.69
KRH53192 Soybean nucleus 40.7 41.37
VIT_18s0001g02000.t01 Wine grape nucleus, plastid 31.63 40.36
VIT_18s0001g03670.t01 Wine grape nucleus 41.4 36.4
HORVU6Hr1G063400.2 Barley plastid 18.6 28.47
HORVU1Hr1G053950.1 Barley mitochondrion, plastid 18.14 26.53
HORVU3Hr1G077490.2 Barley nucleus 28.37 25.15
HORVU4Hr1G061070.1 Barley golgi 24.65 24.09
Protein Annotations
EnsemblPlants:HORVU4Hr1G019890.1EnsemblPlantsGene:HORVU4Hr1G019890Gene3D:3.90.228.10GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:IPR013087InterPro:Znf_C2H2_typePANTHER:PTHR31681PANTHER:PTHR31681:SF21PFscan:PS50157ScanProsite:PS00028
SEG:segSUPFAM:SSF56399UniParc:UPI000294AE36UniProt:M0XYQ0MapMan:15.5.15:
Description
No Description!
Coordinates
chrchr4H:-:95893658..95895386
Molecular Weight (calculated)
45164.2 Da
IEP (calculated)
8.803
GRAVY (calculated)
-0.263
Length
430 amino acids
Sequence
(BLAST)
001: MDATAAGEKM SIAGEKKQQR KSGTSLWGAM GWKSRSRPAG AGDSKNNRSE RETTTTTTTR RSVGIGRSMT CPGSICGTKE SAVLSRESCR SSGRNVSSSG
101: SLKAPDNDVL SVPVVAPGAV VSASSSFNSE TSVATTATTA SSSSSSSSPL SSIVAGSRSF RKLSGCYYEC HSVLDPRTSL VGGAGMLPCS DCDEVFVKAE
201: SLELHRSTHH AVSELGAEDT SRNVVEIIFQ SSWLVGKPRA APICRIEMIL KVHSSGKTVE RFEQYRERVK ATAASSTDEL ARRSFPRCAA DGNEILRFHC
301: TTFTCSLGLA GATSLCRSSP QHCKLCSIIR DGFRVDGDGK IATMATSGRA HDKAQTPLSG GGGGGGEKRA MLVCRVVAGR VKKLVNNSNS SEKSGCDSVS
401: SCSDLDELSV FNPTAILPCF VVMYTVATAT
Best Arabidopsis Sequence Match ( AT1G75710.1 )
(BLAST)
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.