Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G248100.1 | Wheat | plastid | 93.24 | 94.58 |
| TraesCS6D01G230200.1 | Wheat | plastid | 91.46 | 91.79 |
| TraesCS6B01G276600.1 | Wheat | plastid | 91.1 | 91.43 |
| Zm00001d017504_P001 | Maize | mitochondrion | 75.8 | 72.7 |
| Os02t0661600-00 | Rice | mitochondrion | 74.38 | 68.3 |
| KXG31078 | Sorghum | plastid | 74.38 | 66.14 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 45.55 | 50.39 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 49.11 | 48.25 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 45.91 | 48.13 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 46.62 | 47.46 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 48.4 | 46.1 |
| Solyc08g079010.1.1 | Tomato | cytosol | 25.27 | 44.94 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 45.2 | 44.88 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 44.48 | 42.37 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 41.64 | 40.91 |
| CDY42181 | Canola | cytosol | 37.37 | 40.7 |
| CDY63658 | Canola | cytosol | 40.21 | 40.65 |
| KRH77393 | Soybean | mitochondrion | 40.93 | 40.49 |
| AT4G12450.1 | Thale cress | cytosol | 39.86 | 40.43 |
| Bra020842.1-P | Field mustard | cytosol | 37.01 | 40.31 |
| CDX76365 | Canola | cytosol | 37.01 | 40.31 |
| Bra029455.1-P | Field mustard | cytosol | 39.86 | 40.29 |
| CDY16714 | Canola | cytosol | 39.86 | 40.29 |
| HORVU1Hr1G053950.1 | Barley | mitochondrion, plastid | 41.99 | 40.14 |
| KRH28045 | Soybean | mitochondrion | 40.57 | 40.0 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 36.65 | 39.02 |
| AT1G62520.1 | Thale cress | nucleus | 38.08 | 38.21 |
| PGSC0003DMT400012224 | Potato | nucleus | 40.21 | 37.79 |
| KRH04088 | Soybean | cytosol | 38.08 | 36.77 |
| CDY19564 | Canola | nucleus | 34.52 | 36.74 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 34.52 | 36.74 |
| CDY12954 | Canola | nucleus | 34.52 | 36.74 |
| KRH57359 | Soybean | cytosol | 37.01 | 36.36 |
| KRH37293 | Soybean | plastid | 14.23 | 25.97 |
| HORVU2Hr1G125620.2 | Barley | nucleus | 7.12 | 19.8 |
| HORVU4Hr1G019890.1 | Barley | nucleus | 28.47 | 18.6 |
| HORVU4Hr1G061070.1 | Barley | golgi | 28.83 | 18.41 |
| HORVU3Hr1G077490.2 | Barley | nucleus | 29.18 | 16.91 |
Protein Annotations
| EMBL:AK373171 | EnsemblPlants:HORVU6Hr1G063400.2 | EnsemblPlantsGene:HORVU6Hr1G063400 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF12 |
| SEG:seg | SUPFAM:SSF56399 | UniParc:UPI00020082FA | UniProt:F2EAJ6 | MapMan:15.5.15 | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EAJ6]
Coordinates
chrchr6H:+:426821909..426822754
Molecular Weight (calculated)
29382.4 Da
IEP (calculated)
10.759
GRAVY (calculated)
-0.235
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEKPPPPGR RPTAAASWVR SLQCKSMAAD DVVTTVAALP KKSHLLLRSS CGSSGDTHRD VSSCKPKLKS SSKTSSATKK PKAAKPTSVP PSPPPGPLGP
101: LPALTELPAG HSSRQVVEII FLSSWSPLPP APPVAVGGAF TGEVEMLFRV HNQARAVARF EDYRAGVRAR AGGASRSAAD GNEMMRFSPA PPHGCSPSDS
201: ASLRVVRTFD GSGGAHASGR GPETGRRAMF LCRVIAGRVA EGLVAGEAAA KEYDSVRGGK GELVVFDRRA VLPCFLIIYK L
101: LPALTELPAG HSSRQVVEII FLSSWSPLPP APPVAVGGAF TGEVEMLFRV HNQARAVARF EDYRAGVRAR AGGASRSAAD GNEMMRFSPA PPHGCSPSDS
201: ASLRVVRTFD GSGGAHASGR GPETGRRAMF LCRVIAGRVA EGLVAGEAAA KEYDSVRGGK GELVVFDRRA VLPCFLIIYK L
001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL
Arabidopsis Description
Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.