Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029455.1-P | Field mustard | cytosol | 85.92 | 85.61 |
| CDY16714 | Canola | cytosol | 85.92 | 85.61 |
| CDY63658 | Canola | cytosol | 85.56 | 85.25 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 65.34 | 68.56 |
| Solyc08g079010.1.1 | Tomato | cytosol | 33.21 | 58.23 |
| AT1G62520.1 | Thale cress | nucleus | 54.15 | 53.57 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 54.51 | 52.8 |
| KRH28045 | Soybean | mitochondrion | 54.15 | 52.63 |
| KRH77393 | Soybean | mitochondrion | 53.43 | 52.11 |
| PGSC0003DMT400012224 | Potato | nucleus | 54.15 | 50.17 |
| KRH57359 | Soybean | cytosol | 50.9 | 49.3 |
| KRH04088 | Soybean | cytosol | 51.26 | 48.8 |
| Os10t0554001-01 | Rice | cytosol | 31.41 | 47.8 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 42.6 | 46.46 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 42.96 | 44.4 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 45.13 | 43.71 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 43.32 | 43.48 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 43.68 | 42.76 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 45.49 | 42.71 |
| TraesCS5A01G536800.1 | Wheat | cytosol | 29.6 | 42.71 |
| TraesCS6A01G248100.1 | Wheat | plastid | 41.16 | 41.16 |
| TraesCS6B01G276600.1 | Wheat | plastid | 41.52 | 41.07 |
| TraesCS6D01G230200.1 | Wheat | plastid | 41.16 | 40.71 |
| Zm00001d017504_P001 | Maize | mitochondrion | 42.6 | 40.27 |
| HORVU6Hr1G063400.2 | Barley | plastid | 40.43 | 39.86 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 41.88 | 39.32 |
| KXG31078 | Sorghum | plastid | 42.6 | 37.34 |
| KRH37293 | Soybean | plastid | 20.58 | 37.01 |
| Os02t0661600-00 | Rice | mitochondrion | 39.71 | 35.95 |
| Zm00001d047106_P001 | Maize | plastid | 38.27 | 35.81 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 36.82 | 35.29 |
| TraesCS1B01G224700.1 | Wheat | mitochondrion, plastid | 36.82 | 34.81 |
| HORVU1Hr1G053950.1 | Barley | mitochondrion, plastid | 36.82 | 34.69 |
| TraesCS1A01G210700.1 | Wheat | mitochondrion, plastid | 36.46 | 34.47 |
| Zm00001d029869_P001 | Maize | mitochondrion | 37.55 | 33.88 |
| KXG38947 | Sorghum | mitochondrion | 37.55 | 32.5 |
| TraesCS4D01G361200.1 | Wheat | plastid | 35.74 | 32.14 |
| TraesCS4B01G369900.1 | Wheat | plastid | 35.74 | 31.63 |
| AT4G27240.1 | Thale cress | nucleus | 33.94 | 21.81 |
| AT1G11490.2 | Thale cress | mitochondrion | 28.16 | 21.37 |
| AT5G54630.1 | Thale cress | nucleus | 33.94 | 19.92 |
| AT1G75710.1 | Thale cress | nucleus | 33.21 | 19.91 |
| AT2G29660.1 | Thale cress | golgi, plasma membrane | 26.71 | 19.84 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.90.228.10 | EntrezGene:826857 | ProteinID:AEE83134.1 | EMBL:AK176153 | ArrayExpress:AT4G12450 |
| EnsemblPlantsGene:AT4G12450 | RefSeq:AT4G12450 | TAIR:AT4G12450 | RefSeq:AT4G12450-TAIR-G | EnsemblPlants:AT4G12450.1 | TAIR:AT4G12450.1 |
| EMBL:BT010428 | ProteinID:CAB41715.1 | ProteinID:CAB78288.1 | GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_192982.1 |
| PANTHER:PTHR31681 | PANTHER:PTHR31681:SF12 | UniProt:Q9SU37 | SUPFAM:SSF56399 | UniParc:UPI00000AB20A | SEG:seg |
Description
At4g12450 [Source:UniProtKB/TrEMBL;Acc:Q9SU37]
Coordinates
chr4:-:7385695..7386931
Molecular Weight (calculated)
29983.7 Da
IEP (calculated)
9.612
GRAVY (calculated)
-0.382
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIGWVKSLH CKSKAFDDVY HHHSNKGKLL LPSYSCRKNV RDVVNTQPGT VKKNPKPDPS LRRLCSSRRP ELDSNSHHPT RRSVSARASS ESVLPVLTDL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.