Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G248100.1 | Wheat | plastid | 96.07 | 97.11 |
| TraesCS6B01G276600.1 | Wheat | plastid | 96.07 | 96.07 |
| HORVU6Hr1G063400.2 | Barley | plastid | 91.79 | 91.46 |
| Zm00001d017504_P001 | Maize | mitochondrion | 76.43 | 73.04 |
| Os02t0661600-00 | Rice | mitochondrion | 75.0 | 68.63 |
| KXG31078 | Sorghum | plastid | 75.0 | 66.46 |
| GSMUA_Achr5P15290_001 | Banana | nucleus | 46.43 | 51.18 |
| GSMUA_Achr4P27010_001 | Banana | plastid | 49.64 | 48.6 |
| GSMUA_Achr7P07110_001 | Banana | cytosol | 47.5 | 48.19 |
| GSMUA_Achr2P10020_001 | Banana | cytosol | 45.71 | 47.76 |
| GSMUA_Achr1P01700_001 | Banana | nucleus | 49.29 | 46.78 |
| Solyc08g079010.1.1 | Tomato | cytosol | 25.36 | 44.94 |
| GSMUA_Achr4P30380_001 | Banana | cytosol | 45.36 | 44.88 |
| GSMUA_Achr5P13520_001 | Banana | cytosol, mitochondrion, peroxisome | 44.64 | 42.37 |
| CDY63658 | Canola | cytosol | 41.07 | 41.37 |
| AT4G12450.1 | Thale cress | cytosol | 40.71 | 41.16 |
| CDY42181 | Canola | cytosol | 37.86 | 41.09 |
| CDY16714 | Canola | cytosol | 40.71 | 41.01 |
| Bra029455.1-P | Field mustard | cytosol | 40.71 | 41.01 |
| TraesCS1D01G214000.1 | Wheat | mitochondrion, plastid | 42.14 | 40.83 |
| Bra020842.1-P | Field mustard | cytosol | 37.5 | 40.7 |
| CDX76365 | Canola | cytosol | 37.5 | 40.7 |
| VIT_02s0154g00220.t01 | Wine grape | cytosol | 40.71 | 39.86 |
| KRH77393 | Soybean | mitochondrion | 40.36 | 39.79 |
| KRH28045 | Soybean | mitochondrion | 40.0 | 39.3 |
| AT4G22560.1 | Thale cress | cytosol, plastid | 36.79 | 39.02 |
| TraesCS4D01G361200.1 | Wheat | plastid | 42.5 | 38.64 |
| AT1G62520.1 | Thale cress | nucleus | 38.21 | 38.21 |
| Bra027038.1-P | Field mustard | cytosol, plastid | 35.36 | 37.5 |
| CDY12954 | Canola | nucleus | 35.36 | 37.5 |
| CDY19564 | Canola | nucleus | 35.36 | 37.5 |
| PGSC0003DMT400012224 | Potato | nucleus | 39.29 | 36.79 |
| KRH04088 | Soybean | cytosol | 37.5 | 36.08 |
| KRH57359 | Soybean | cytosol | 36.43 | 35.66 |
| KRH37293 | Soybean | plastid | 14.29 | 25.97 |
| TraesCS4D01G215000.1 | Wheat | golgi | 29.64 | 19.21 |
| TraesCS4D01G108700.1 | Wheat | nucleus | 28.21 | 18.08 |
| TraesCS3D01G317900.1 | Wheat | nucleus | 29.64 | 17.26 |
| TraesCS2D01G004200.1 | Wheat | nucleus, plastid | 29.64 | 16.9 |
| TraesCS2D01G580400.1 | Wheat | nucleus | 27.86 | 15.57 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G230200.1 | EnsemblPlantsGene:TraesCS6D01G230200 | Gene3D:3.90.228.10 | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF12 | SEG:seg |
| SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:323044178..323045057
Molecular Weight (calculated)
28989.7 Da
IEP (calculated)
10.571
GRAVY (calculated)
-0.240
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MPEKPPPLGR RPTASASWVR SLHCKSMAAD DVAANVAALP KKSHLLLPSS CASSGDAQGD VSSCKPKLKS SSKTSSGTKK PKAAKPTSVP PSPPPGPLGP
101: LPALTELPAG HSSRQVVEII FLSSWSPLPP APAAAAGGAF AGEVEMLFRV HNQARAVARF EDYRAAVRAR AGGASRSAAD GNEMMRFSPA PPHGSSSSDS
201: ASLRVVRTFD GSGGAHASGR GPETGRRAMF LCRVIAGRVA EGPCSEAAGK EYDSVRGGKG ELVVFDRRAV LPCFLIIYKL
101: LPALTELPAG HSSRQVVEII FLSSWSPLPP APAAAAGGAF AGEVEMLFRV HNQARAVARF EDYRAAVRAR AGGASRSAAD GNEMMRFSPA PPHGSSSSDS
201: ASLRVVRTFD GSGGAHASGR GPETGRRAMF LCRVIAGRVA EGPCSEAAGK EYDSVRGGKG ELVVFDRRAV LPCFLIIYKL
001: MPIGWVKSLH CKSKAFDDVY HHHSNKGKLL LPSYSCRKNV RDVVNTQPGT VKKNPKPDPS LRRLCSSRRP ELDSNSHHPT RRSVSARASS ESVLPVLTDL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL
Arabidopsis Description
At4g12450 [Source:UniProtKB/TrEMBL;Acc:Q9SU37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.