CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EER90880
EER98550
EES03295
EES07517
EES07849
KXG22639
KXG22761
KXG29961

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	EER90880	AT1G05410.1	21798944
AT4G12450.1	EER98550	AT2G23290.1	21798944
AT4G12450.1	EES07849	AT3G08530.1	21798944
AT4G12450.1	KXG22761	AT3G08530.1	21798944
AT4G12450.1	EES07517	AT3G48150.1	21798944
AT4G12450.1	EER88427	AT4G01090.1	21798944
AT4G12450.1	EES03295	AT4G01090.1	21798944
AT4G12450.1	KXG22639	AT4G01090.1	21798944
AT4G12450.1	KXG29961	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017504_P001	Maize	mitochondrion	82.91	89.42
TraesCS6A01G248100.1	Wheat	plastid	65.82	75.09
TraesCS6D01G230200.1	Wheat	plastid	66.46	75.0
HORVU6Hr1G063400.2	Barley	plastid	66.14	74.38
TraesCS6B01G276600.1	Wheat	plastid	65.51	73.93
Os02t0661600-00	Rice	mitochondrion	67.41	69.61
GSMUA_Achr5P15290_001	Banana	nucleus	42.41	52.76
GSMUA_Achr4P27010_001	Banana	plastid	43.99	48.6
GSMUA_Achr7P07110_001	Banana	cytosol	42.41	48.55
GSMUA_Achr2P10020_001	Banana	cytosol	40.82	48.13
GSMUA_Achr1P01700_001	Banana	nucleus	43.67	46.78
GSMUA_Achr4P30380_001	Banana	cytosol	41.46	46.29
Solyc08g079010.1.1	Tomato	cytosol	22.15	44.3
AT4G12450.1	Thale cress	cytosol	37.34	42.6
VIT_02s0154g00220.t01	Wine grape	cytosol	38.29	42.31
CDY42181	Canola	cytosol	34.49	42.25
AT1G62520.1	Thale cress	nucleus	37.34	42.14
CDY63658	Canola	cytosol	37.03	42.09
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	39.24	42.03
Bra020842.1-P	Field mustard	cytosol	34.18	41.86
CDX76365	Canola	cytosol	34.18	41.86
KRH28045	Soybean	mitochondrion	37.66	41.75
Bra029455.1-P	Field mustard	cytosol	36.71	41.73
CDY16714	Canola	cytosol	36.71	41.73
KRH77393	Soybean	mitochondrion	36.71	40.85
AT4G22560.1	Thale cress	cytosol, plastid	33.86	40.53
CDY12954	Canola	nucleus	33.23	39.77
CDY19564	Canola	nucleus	33.23	39.77
Bra027038.1-P	Field mustard	cytosol, plastid	32.91	39.39
KXG38947	Sorghum	mitochondrion	39.87	39.38
KRH04088	Soybean	cytosol	35.76	38.83
PGSC0003DMT400012224	Potato	nucleus	36.08	38.13
KRH57359	Soybean	cytosol	34.18	37.76
KRH37293	Soybean	plastid	12.97	26.62
EER92505	Sorghum	extracellular, plasma membrane	26.9	18.68
EER88828	Sorghum	cytosol	25.0	18.29
KXG27839	Sorghum	nucleus, plastid	25.32	17.78
EES10376	Sorghum	nucleus	30.38	17.71
EES11701	Sorghum	nucleus	26.9	17.17
EES03733	Sorghum	nucleus	25.95	15.68

Protein Annotations

EnsemblPlants:KXG31078	EnsemblPlantsGene:SORBI_3004G293200	Gene3D:3.90.228.10	PANTHER:PTHR31681	PANTHER:PTHR31681:SF12	ProteinID:KXG31078
ProteinID:KXG31078.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI0007F1A898	UniProt:A0A194YS62	MapMan:15.5.15

Description

hypothetical protein

Coordinates

chr4:+:63346143..63348459

Molecular Weight (calculated)

32702.2 Da

IEP (calculated)

11.216

GRAVY (calculated)

-0.333

Length

316 amino acids

Sequence
(BLAST)

001: MPEKPPPLSR RPTAAAGSWV RSLHCKSMAA DDVAARVATA AAPKKLHPLL PRGAGCGSSG DTLSHVVSSK PTSRPKPKPK PKPSPEPAKR KTAKPKPAAV
101: PPSPPPGPLG PVPALTELPA GHSSRQVVEI IFLSSWSSPL PVPVPQPPPP RGPGAPTTTT SSSAFPGVVE MMFRVHNPAR AVARFEDYRA AVRARAGGAS
201: RSAADGNEMM RFSPAPPYGS SSASTATTGG EDDGAPRIRT FDGSGGAHAS AARGPPAAGR RAMFLCRVIA GRVAETEAAA AGKDEHFDSV RVGRGGELVV
301: FDRRAVLPCF LIIYKL

Best Arabidopsis Sequence Match ( AT4G12450.1 )
(BLAST)

001: MPIGWVKSLH CKSKAFDDVY HHHSNKGKLL LPSYSCRKNV RDVVNTQPGT VKKNPKPDPS LRRLCSSRRP ELDSNSHHPT RRSVSARASS ESVLPVLTDL
101: PDGHPSRNVV EIIFQSSWSS DEFPGRVEMI FKVENGSKAV TRFEEYREAV KSRSCSKVDS DRVDGSACDE NARCSADGNE MMRFFPLGPI PGGINGGAWG
201: FPGGKGAAVC TFSGSGEAHA STGGGGGRRA MLICRVIAGR VAKKGEFGSD SVAGRAGELI VFDARAVLPC FLIFFRL

Arabidopsis Description

At4g12450 [Source:UniProtKB/TrEMBL;Acc:Q9SU37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.