Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026684_P001 | Maize | nucleus | 72.12 | 85.2 |
| HORVU2Hr1G125620.2 | Barley | nucleus | 15.15 | 74.26 |
| TraesCS2A01G569700.1 | Wheat | nucleus | 38.18 | 72.14 |
| TraesCS2B01G627700.1 | Wheat | nucleus | 57.98 | 58.1 |
| TraesCS2D01G580400.1 | Wheat | nucleus | 57.98 | 57.29 |
| Os04t0690100-01 | Rice | nucleus | 56.97 | 56.63 |
| KXG27839 | Sorghum | nucleus, plastid | 37.17 | 40.89 |
| EES10376 | Sorghum | nucleus | 35.96 | 32.84 |
| EER92505 | Sorghum | extracellular, plasma membrane | 26.87 | 29.23 |
| EES03733 | Sorghum | nucleus | 30.51 | 28.87 |
| KXG38947 | Sorghum | mitochondrion | 17.98 | 27.81 |
| EER88828 | Sorghum | cytosol | 24.24 | 27.78 |
| KXG31078 | Sorghum | plastid | 17.17 | 26.9 |
Protein Annotations
| EnsemblPlants:EES11701 | EnsemblPlantsGene:SORBI_3006G278400 | EntrezGene:8076513 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF22 | PFscan:PS50157 |
| ProteinID:EES11701 | ProteinID:EES11701.1 | RefSeq:XP_002447373.1 | ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF56399 |
| unigene:Sbi.12144 | UniParc:UPI0001A870B4 | UniProt:C5YB32 | MapMan:15.5.15 | : | : |
Description
hypothetical protein
Coordinates
chr6:+:60906805..60909464
Molecular Weight (calculated)
52683.1 Da
IEP (calculated)
8.874
GRAVY (calculated)
-0.538
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEPGRSAGV REAKKSSTTS SSTAAAAMVK KKLTTTKKRP EKEEKAEKKQ SRQCTEPESP SYRLALKSLF SCRNSHGHGQ HHARPRAQQD TGSRSKRLGC
101: SAPSICKLRD DSESRHQRMP VPPPEDTMGG TTAGEPCKRR ASVSGSSERC VKKPLSESKC GTGRSSSATA ASSSSNSKQL QRGGSSLSSS SSSGGSSFRA
201: GMQLRRLSGC YECHMVVDPV SGSTSMRATA STICPCPDCG EVFVRQESLH LHQSIRHAVS ELSADDTSRN IIEIIFQSSW LKKQSPVCMV DRILKVHNTP
301: RTLARFEEYR DAVKARAAAG GGAGQQPVAM GANNRHPRCT ADGNELLRFH CATLACSLGL NGATHLCDAA AAAGGCAACG IIRDGFSRSA SDGGVLTMAT
401: SGRAHDAVPV PVPAAEGEEA ERQQRRAMLV CRVIAGRVKR PKEEAEQASE EEAGPGEEEE YDSVAGSAGV YSNLEELLVF NPRAILPCFV VVYKA
101: SAPSICKLRD DSESRHQRMP VPPPEDTMGG TTAGEPCKRR ASVSGSSERC VKKPLSESKC GTGRSSSATA ASSSSNSKQL QRGGSSLSSS SSSGGSSFRA
201: GMQLRRLSGC YECHMVVDPV SGSTSMRATA STICPCPDCG EVFVRQESLH LHQSIRHAVS ELSADDTSRN IIEIIFQSSW LKKQSPVCMV DRILKVHNTP
301: RTLARFEEYR DAVKARAAAG GGAGQQPVAM GANNRHPRCT ADGNELLRFH CATLACSLGL NGATHLCDAA AAAGGCAACG IIRDGFSRSA SDGGVLTMAT
401: SGRAHDAVPV PVPAAEGEEA ERQQRRAMLV CRVIAGRVKR PKEEAEQASE EEAGPGEEEE YDSVAGSAGV YSNLEELLVF NPRAILPCFV VVYKA
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.