Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G569700.1 | Wheat | nucleus | 49.8 | 93.89 |
| TraesCS2D01G580400.1 | Wheat | nucleus | 95.14 | 93.81 |
| HORVU2Hr1G125620.2 | Barley | nucleus | 18.22 | 89.11 |
| Zm00001d026684_P001 | Maize | nucleus | 52.23 | 61.58 |
| EES11701 | Sorghum | nucleus | 58.1 | 57.98 |
| Os04t0690100-01 | Rice | nucleus | 56.07 | 55.62 |
| TraesCS4B01G111000.1 | Wheat | nucleus | 35.83 | 40.5 |
| TraesCS1B01G224700.1 | Wheat | mitochondrion, plastid | 17.41 | 29.35 |
| TraesCS3B01G353600.1 | Wheat | nucleus | 28.14 | 28.6 |
| TraesCS6B01G276600.1 | Wheat | plastid | 15.99 | 28.21 |
| TraesCS4B01G369900.1 | Wheat | plastid | 17.0 | 26.84 |
| TraesCS4B01G214400.1 | Wheat | golgi | 22.67 | 25.87 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G627700.1 | EnsemblPlantsGene:TraesCS2B01G627700 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR31681 | PANTHER:PTHR31681:SF21 | PFscan:PS50157 | ScanProsite:PS00028 |
| SEG:seg | SUPFAM:SSF56399 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr2B:+:799532099..799534348
Molecular Weight (calculated)
51663.6 Da
IEP (calculated)
9.207
GRAVY (calculated)
-0.521
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEPNRSAGS KSSTTTTTVR KKKLAATSPA TPKPDKEKLP DGGKKHQSSH GSSATAAAAD SPSYRLALRS LFSCRNSHAA QHQHNQRAAP PQPAPAPADD
101: ASSRRCKKKS KKQTQLGCSA SICKLRDASP RRVTLHRPPA EEEPPSGAAT GAGEPCKRRA SVSGGGERRV KKPLQQPQHG QGNEAAAAGA VVVGSSSRHW
201: GSSTASSSSS TAGGGGGSSF RLRRLSGCYE CHMVVDPAGG GSSMRAAIFP CPDCGDVFVR AESLHLHQST RHAVSELGPE DTSRNIIEII FQSSWLKKQT
301: PVCAVDRILK VHNAPATLAR FEAYRDAVKA RARGGRPGAG RCTADGNELL RFHCAALACS LGAGGATHLC DAAGSSCAAC GIVRDGFKFR APGVRTMATS
401: GRAHDDAVGG EEGEGGGERR RAMLVCRVIA GRVKRRCEGT ADKEEAEASP SAEEEAEEEY DSVAGTAGVY SSLDELEVFN PTAILPCFVV VYKA
101: ASSRRCKKKS KKQTQLGCSA SICKLRDASP RRVTLHRPPA EEEPPSGAAT GAGEPCKRRA SVSGGGERRV KKPLQQPQHG QGNEAAAAGA VVVGSSSRHW
201: GSSTASSSSS TAGGGGGSSF RLRRLSGCYE CHMVVDPAGG GSSMRAAIFP CPDCGDVFVR AESLHLHQST RHAVSELGPE DTSRNIIEII FQSSWLKKQT
301: PVCAVDRILK VHNAPATLAR FEAYRDAVKA RARGGRPGAG RCTADGNELL RFHCAALACS LGAGGATHLC DAAGSSCAAC GIVRDGFKFR APGVRTMATS
401: GRAHDDAVGG EEGEGGGERR RAMLVCRVIA GRVKRRCEGT ADKEEAEASP SAEEEAEEEY DSVAGTAGVY SSLDELEVFN PTAILPCFVV VYKA
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
Arabidopsis Description
C2H2-like zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LR10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.