CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRG97711
KRG99083
KRH14933
KRH16959
KRH24006
KRH27646
KRH27971
KRH28419
KRH29310
KRH31163
KRH53667
KRH57983
KRH64261
KRH67075
KRH73205
KRH77058
KRH77487
KRH77849

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12450.1	KRG99083	AT1G05410.1	21798944
AT4G12450.1	KRH27646	AT1G05410.1	21798944
AT4G12450.1	KRH77849	AT1G05410.1	21798944
AT4G12450.1	KRG95394	AT2G19650.1	21798944
AT4G12450.1	KRH67075	AT2G19650.1	21798944
AT4G12450.1	KRH28419	AT2G23290.1	21798944
AT4G12450.1	KRH57983	AT2G23290.1	21798944
AT4G12450.1	KRH77058	AT2G23290.1	21798944
AT4G12450.1	KRG97711	AT3G08530.1	21798944
AT4G12450.1	KRH14933	AT3G08530.1	21798944
AT4G12450.1	KRH31163	AT3G08530.1	21798944
AT4G12450.1	KRH73205	AT3G08530.1	21798944
AT4G12450.1	KRH24006	AT3G48150.1	21798944
AT4G12450.1	KRH27971	AT3G48150.1	21798944
AT4G12450.1	KRH29310	AT3G48150.1	21798944
AT4G12450.1	KRH77487	AT3G48150.1	21798944
AT4G12450.1	KRH16959	AT3G49580.1	21798944
AT4G12450.1	KRH53667	AT3G49580.1	21798944
AT4G12450.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77393	Soybean	mitochondrion	91.93	92.25
Solyc08g079010.1.1	Tomato	cytosol	40.7	73.42
KRH57359	Soybean	cytosol	72.28	72.03
KRH04088	Soybean	cytosol	71.23	69.76
VIT_02s0154g00220.t01	Wine grape	cytosol	68.77	68.53
PGSC0003DMT400012224	Potato	nucleus	63.16	60.2
AT1G62520.1	Thale cress	nucleus	57.54	58.57
CDY19564	Canola	nucleus	52.98	57.2
CDY12954	Canola	nucleus	52.63	56.82
Bra027038.1-P	Field mustard	cytosol, plastid	52.28	56.44
Bra029455.1-P	Field mustard	cytosol	52.98	54.32
CDY16714	Canola	cytosol	52.98	54.32
CDY63658	Canola	cytosol	52.98	54.32
AT4G12450.1	Thale cress	cytosol	52.63	54.15
CDY42181	Canola	cytosol	48.77	53.88
AT4G22560.1	Thale cress	cytosol, plastid	49.82	53.79
Bra020842.1-P	Field mustard	cytosol	48.42	53.49
CDX76365	Canola	cytosol	48.42	53.49
KRH37293	Soybean	plastid	28.77	53.25
Os10t0554001-01	Rice	cytosol	32.63	51.1
GSMUA_Achr2P10020_001	Banana	cytosol	45.26	48.13
GSMUA_Achr5P15290_001	Banana	nucleus	42.81	48.03
GSMUA_Achr4P27010_001	Banana	plastid	47.02	46.85
GSMUA_Achr7P07110_001	Banana	cytosol	45.26	46.74
GSMUA_Achr4P30380_001	Banana	cytosol	43.86	44.17
GSMUA_Achr1P01700_001	Banana	nucleus	45.26	43.73
TraesCS5A01G536800.1	Wheat	cytosol	28.77	42.71
TraesCS6A01G248100.1	Wheat	plastid	39.65	40.79
HORVU6Hr1G063400.2	Barley	plastid	40.0	40.57
TraesCS6B01G276600.1	Wheat	plastid	39.65	40.36
GSMUA_Achr5P13520_001	Banana	cytosol, mitochondrion, peroxisome	41.75	40.34
Zm00001d017504_P001	Maize	mitochondrion	41.4	40.27
TraesCS6D01G230200.1	Wheat	plastid	39.3	40.0
TraesCS1D01G214000.1	Wheat	mitochondrion, plastid	38.25	37.72
KXG31078	Sorghum	plastid	41.75	37.66
Zm00001d047106_P001	Maize	plastid	38.6	37.16
Os02t0661600-00	Rice	mitochondrion	39.65	36.93
TraesCS1B01G224700.1	Wheat	mitochondrion, plastid	37.89	36.86
Zm00001d029869_P001	Maize	mitochondrion	39.65	36.81
HORVU1Hr1G053950.1	Barley	mitochondrion, plastid	37.89	36.73
TraesCS1A01G210700.1	Wheat	mitochondrion, plastid	37.54	36.52
KXG38947	Sorghum	mitochondrion	39.3	35.0
KRH25897	Soybean	cytosol	20.7	33.15
TraesCS4D01G361200.1	Wheat	plastid	35.44	32.79
TraesCS4B01G369900.1	Wheat	plastid	35.79	32.59
KRH17425	Soybean	nucleus	36.14	24.88
KRH05942	Soybean	nucleus	36.14	24.7
KRG98330	Soybean	endoplasmic reticulum, golgi	31.23	23.3
KRH27121	Soybean	cytosol, plastid	34.74	22.71
KRH55605	Soybean	cytosol	35.09	22.68
KRH22216	Soybean	cytosol, plastid	34.74	22.55
KRH73867	Soybean	cytosol	11.93	22.52
KRH14275	Soybean	cytosol	20.35	21.72
KRH10693	Soybean	nucleus	29.12	20.85
KRH21644	Soybean	nucleus	28.77	20.55
KRH64726	Soybean	nucleus	30.53	20.42
KRH53192	Soybean	nucleus	30.18	20.33
KRH58632	Soybean	nucleus	22.81	17.96

Protein Annotations

EMBL:ACUP02006739	EnsemblPlants:KRH28045	EnsemblPlantsGene:GLYMA_11G031300	EntrezGene:100804686	Gene3D:3.90.228.10	PANTHER:PTHR31681
PANTHER:PTHR31681:SF12	ProteinID:KRH28045	ProteinID:KRH28045.1	SEG:seg	SUPFAM:SSF56399	UniParc:UPI000233C9D2
UniProt:I1LGN3	MapMan:15.5.15	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:2269796..2271258

Molecular Weight (calculated)

30973.0 Da

IEP (calculated)

9.822

GRAVY (calculated)

-0.401

Length

285 amino acids

Sequence
(BLAST)

001: MASGWMKSLQ CKSRAYQDVY HPNSKYLIPS SSCRKTIKDV VVDTTKPRPK PNPKPEKPLQ KHPSSRYPSS AAKPDFETTI NRSRSVTATR HADPRFPSLT
101: ELTEGHPSRN VVEIIFHTSW GPKPFSGLVE MIFKVHNGPR TVSRFEEYRE AVKVRAGTGP AHDYEENARC VADGNEVMRF HCLGPTSGGA PYGGACALSF
201: PGGKGAAICT FSGSGGAHES SGGGRGRRAM LVCRVIAGRI SKQIGFVESL LDGRVGFDSV SGDNGELLVF DSRAVLPCFL IIYKL

Best Arabidopsis Sequence Match ( AT1G62520.1 )
(BLAST)

001: MANGWVKSLQ CKSKAFDDVY NPIKNPNPNP SPSPKHLMSS YSCRKSTQSL KDVIETKKPK PKPKKPNPKP DKRETDPVLS PSTRIRSTGV RDRDPFLPTL
101: TELSEGHQSR NVVEIIFQTS WGPKPFSGRV EMIFKVQNGS KTLTRFEEYR EAVKARSVGK AREENARSVA DGNETMRFYC LGPSYGGGGS AWGILGGKGG
201: GASIYTFAGS STANEKAGGG KGRKAMLVCR VIAGRVTKQN ELKYDSDLRS RFDSVSGDDG ELLVFDTRAV LPCFLIIYRL

Arabidopsis Description

Sulfated surface-like glycoprotein [Source:UniProtKB/TrEMBL;Acc:Q9SXE5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.