Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
- plastid 1
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 24385303 endoplasmic reticulum: 27224218 nucleus: 27291164 endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
24385303
doi
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH14933 | Soybean | nucleus | 98.89 | 99.29 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 96.66 | 97.06 |
| KRH31163 | Soybean | endoplasmic reticulum | 96.25 | 96.65 |
| Solyc06g051310.2.1 | Tomato | nucleus | 92.85 | 93.18 |
| Solyc05g052510.2.1 | Tomato | nucleus, plastid | 92.74 | 92.79 |
| Solyc03g096000.2.1 | Tomato | nucleus | 92.09 | 92.36 |
| CDY36318 | Canola | cytosol | 39.66 | 91.98 |
| AT3G08530.1 | Thale cress | cytosol, plasma membrane, plastid | 91.68 | 91.9 |
| AT3G11130.1 | Thale cress | cytosol, plasma membrane | 91.68 | 91.79 |
| Bra034166.1-P | Field mustard | cytosol | 77.56 | 91.44 |
| CDY36301 | Canola | cytosol | 89.98 | 91.43 |
| Bra034864.1-P | Field mustard | cytosol | 79.67 | 91.4 |
| CDY00724 | Canola | cytosol | 89.87 | 91.31 |
| KRH76885 | Soybean | endoplasmic reticulum | 90.98 | 91.25 |
| CDY00997 | Canola | extracellular | 91.21 | 91.21 |
| CDX73889 | Canola | cytosol | 89.92 | 91.21 |
| KRH28591 | Soybean | endoplasmic reticulum | 90.92 | 91.19 |
| CDY07954 | Canola | cytosol | 89.4 | 91.1 |
| CDX74011 | Canola | cytosol | 89.4 | 90.94 |
| EES07849 | Sorghum | plastid | 91.04 | 90.93 |
| KRH72708 | Soybean | endoplasmic reticulum, mitochondrion | 90.74 | 90.8 |
| KRH17059 | Soybean | endoplasmic reticulum, nucleus | 90.51 | 90.72 |
| KXG22761 | Sorghum | plastid | 90.86 | 90.7 |
| CDY08549 | Canola | cytosol | 81.96 | 90.55 |
| TraesCS5A01G153500.1 | Wheat | golgi, unclear | 90.16 | 90.11 |
| TraesCS5B01G152300.1 | Wheat | unclear | 90.16 | 90.11 |
| TraesCS5D01G158800.1 | Wheat | plastid | 90.1 | 90.05 |
| CDY22158 | Canola | cytosol | 10.02 | 90.0 |
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 90.33 | 89.91 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 90.28 | 89.85 |
| Os11t0104900-00 | Rice | plasma membrane | 36.67 | 89.56 |
| Bra001286.1-P | Field mustard | cytosol | 77.86 | 89.56 |
| TraesCS4B01G136100.2 | Wheat | golgi, unclear | 90.22 | 88.91 |
| Bra001391.1-P | Field mustard | cytosol | 75.4 | 88.64 |
| Os12t0104766-00 | Rice | plasma membrane | 29.41 | 86.85 |
| Os11t0104866-00 | Rice | plasma membrane | 29.29 | 86.51 |
| HORVU4Hr1G024710.4 | Barley | plastid | 90.16 | 86.41 |
| CDY36317 | Canola | cytosol | 12.71 | 85.77 |
| HORVU5Hr1G048010.1 | Barley | plastid | 89.98 | 85.19 |
| CDY27997 | Canola | cytosol | 79.55 | 84.88 |
| KRH12961 | Soybean | cytosol | 4.75 | 84.38 |
| CDY35984 | Canola | cytosol | 79.26 | 84.25 |
| Bra029698.1-P | Field mustard | cytosol | 72.94 | 84.18 |
| KRH25762 | Soybean | cytosol | 4.57 | 81.25 |
| CDY22157 | Canola | cytosol | 3.46 | 75.64 |
| Os12t0104800-01 | Rice | cytosol | 5.33 | 74.59 |
| Zm00001d021067_P001 | Maize | cytosol, mitochondrion | 18.75 | 72.23 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 2.05 | 66.04 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 4.04 | 59.48 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 8.61 | 47.88 |
| CDY06504 | Canola | extracellular, mitochondrion | 2.17 | 39.36 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr2:+:44515100..44528408
Molecular Weight (calculated)
193146.0 Da
IEP (calculated)
5.057
GRAVY (calculated)
-0.142
Length
1707 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPITM KEALTLPSIG INSQFITFTH VTMESDKYIC VRETAPQNSV VIIDMNMPNQ PLRRPITADS ALMNPNSRIL ALKAQLQGTT QDHLQIFNIE
0101: MKAKMKSYQM PEQVVFWKWI SPKMLGLVTQ TSVYHWSIEG DSEPVKMFER TANLANNQII NYRCDPTEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSVLISFAS KTLNAGQVIS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQIS HKYNLIYVIT KLGLLFVYDL
0301: ETATAVYRNR ISPDPIFLTS EATSVGGFYA INRRGQVLLA TVNEQTIVNF VSGQLNNLEL AVSLAKRGNL PGAEKLVVER FHELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ VGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNSHAI EPQSLVEFFG TLSKEWALEC MKDLLLANLR GNLQIIVQVA
0701: KEYCEQLGVD ACIKLFEQFR SYEGLYFFLG SYLSSSEDPD IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM VRYIEGYVQK VNPGNAPLVV GQLLDDECAE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQARY VVERMDGDLW AKVLDPDNEY RRQLIDQVVS TALPESSSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYVNR LDNFDGPAVG EMAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNIHSIDRAV EFAFRVEEDA VWSQVAKAQL RDGLVSDAIE SFIRADDATQ FLDVIRAAED GNVYHDLVKY LLMVRGKAKE PKVDSELIYA YAKIDRLSDI
1201: EEFILMPNVA NLQNVGDRLY DEALYEAAKI IFAFISNWAK LAITLVKLQQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IVQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TIMNHSPEAW
1401: DHMQFKDVVV KVANVELYYK AVHFYLEEHP DLINDVLNVL ALRVDHARVV DIMRKAGHLR LVKPYMVAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDNFDQIGLA QKIEKHELLE MRRVAAYIYK KAGRWKQSIA LSKKDNLYKD AMETASQSGE RELAEELLVY FIDQGKKECF ASCLFVCYDL IRADIVLELA
1601: WMHNMIDFAF PYLLQFIREY TGKVDELVKD KIEAQNEVKV KEQEEKDVVA QQNMYAQLLP LALPAPPMPG MGGPGGMGGG FAPPPPMGGL GMPPMPPYGM
1701: PPMGSSF
0101: MKAKMKSYQM PEQVVFWKWI SPKMLGLVTQ TSVYHWSIEG DSEPVKMFER TANLANNQII NYRCDPTEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSVLISFAS KTLNAGQVIS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQIS HKYNLIYVIT KLGLLFVYDL
0301: ETATAVYRNR ISPDPIFLTS EATSVGGFYA INRRGQVLLA TVNEQTIVNF VSGQLNNLEL AVSLAKRGNL PGAEKLVVER FHELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ VGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HGFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNSHAI EPQSLVEFFG TLSKEWALEC MKDLLLANLR GNLQIIVQVA
0701: KEYCEQLGVD ACIKLFEQFR SYEGLYFFLG SYLSSSEDPD IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM VRYIEGYVQK VNPGNAPLVV GQLLDDECAE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQARY VVERMDGDLW AKVLDPDNEY RRQLIDQVVS TALPESSSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYVNR LDNFDGPAVG EMAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNIHSIDRAV EFAFRVEEDA VWSQVAKAQL RDGLVSDAIE SFIRADDATQ FLDVIRAAED GNVYHDLVKY LLMVRGKAKE PKVDSELIYA YAKIDRLSDI
1201: EEFILMPNVA NLQNVGDRLY DEALYEAAKI IFAFISNWAK LAITLVKLQQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IVQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TIMNHSPEAW
1401: DHMQFKDVVV KVANVELYYK AVHFYLEEHP DLINDVLNVL ALRVDHARVV DIMRKAGHLR LVKPYMVAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDNFDQIGLA QKIEKHELLE MRRVAAYIYK KAGRWKQSIA LSKKDNLYKD AMETASQSGE RELAEELLVY FIDQGKKECF ASCLFVCYDL IRADIVLELA
1601: WMHNMIDFAF PYLLQFIREY TGKVDELVKD KIEAQNEVKV KEQEEKDVVA QQNMYAQLLP LALPAPPMPG MGGPGGMGGG FAPPPPMGGL GMPPMPPYGM
1701: PPMGSSF
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.