CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03947
KRH16959
KRH24006
KRH27971
KRH29310
KRH53667
KRH57220
KRH64261
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07440.1	KRH24006	AT3G48150.1	21798944
AT3G07440.1	KRH27971	AT3G48150.1	21798944
AT3G07440.1	KRH29310	AT3G48150.1	21798944
AT3G07440.1	KRH77487	AT3G48150.1	21798944
AT3G07440.1	KRH03947	AT4G24840.1	21798944
AT3G07440.1	KRH57220	AT4G24840.1	21798944
AT3G07440.1	KRH16959	AT5G24660.1	21798944
AT3G07440.1	KRH53667	AT5G24660.1	21798944
AT3G07440.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07362	Soybean	mitochondrion	76.96	94.65
AT5G48530.1	Thale cress	mitochondrion	56.52	66.67
Bra037481.1-P	Field mustard	mitochondrion	65.22	64.1
CDX85344	Canola	mitochondrion	65.22	64.1
CDX86300	Canola	mitochondrion	65.22	64.1
AT3G07440.1	Thale cress	mitochondrion	62.17	60.85
Solyc09g058990.2.1	Tomato	mitochondrion	63.04	59.67
HORVU1Hr1G058580.1	Barley	mitochondrion	55.65	57.66
GSMUA_Achr2P06060_001	Banana	nucleus	39.13	56.6
TraesCS1D01G232300.1	Wheat	mitochondrion	54.35	56.31
TraesCS1A01G229700.1	Wheat	mitochondrion	55.22	56.19
TraesCS1B01G244400.2	Wheat	mitochondrion	54.78	55.75
VIT_00s0337g00070.t01	Wine grape	mitochondrion	18.26	45.16
EES05056	Sorghum	mitochondrion	56.52	43.33
Zm00001d016490_P001	Maize	mitochondrion	55.22	42.33
Os02t0478500-01	Rice	nucleus	55.22	34.99

Protein Annotations

EMBL:ACUP02001921	EnsemblPlants:KRH66195	EnsemblPlantsGene:GLYMA_03G089600	EntrezGene:100798650	PANTHER:PTHR36031	ProteinID:KRH66195
ProteinID:KRH66195.1	UniParc:UPI0002336D71	UniProt:I1JM95	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:26675419..26678557

Molecular Weight (calculated)

27989.7 Da

IEP (calculated)

9.481

GRAVY (calculated)

-1.349

Length

230 amino acids

Sequence
(BLAST)

001: MLSLAKRLQV QPLTTPFLLG QLRWARTRPK SPPVALKRAE ERSEWWAVDG EVHEIGDLVP LRERFVIPRE NIPNKRRKQL REQFMRRTRL VLKESEHDPW
101: CKKYMELYNE LRENWERLYW DEGYTKKLAQ DHANYESAED DDGDFSPYRS RRPQSQMEHS KDQNFGRNRQ SDNWEKVNLL RDKFEYDRER RMREKAFAPM
201: HGGSVPDSHD SDRWNQPLNT DRYFSQTERH

Best Arabidopsis Sequence Match ( AT3G07440.2 )
(BLAST)

001: MNFVVRRVGS ILPSIRHGGV SQIRLARTEA GQPRRRNKLP SLPLKKKEEK SEWWIVDGEM HEIGDHVPPR ERFTIPRDNI PNKRRKQLRD QFMRRTRLVL
101: KESEHEPWCK KYMELYNELR ENWERLYWDE GYSKKLASDH ANYESAEEDD EDFNPYRNRR SFSDQTKEQG FNRTTQGDNW EKVSQIRDKF EYDRERRMRD
201: KAFAPMNAAP ESQESRDLNW NAQRRPFDPD RFARD

Arabidopsis Description

F21O3.15 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.