CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70811
CDX80461
CDX92658
CDY03412
CDY05402
CDY05452
CDY11039
CDY34317
CDY36901
CDY44976
CDY51233
CDY58069
CDY58070
CDY69515
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07440.1	CDY36901	AT3G48150.1	21798944
AT3G07440.1	CDY44976	AT3G48150.1	21798944
AT3G07440.1	CDY58069	AT3G48150.1	21798944
AT3G07440.1	CDY58070	AT3G48150.1	21798944
AT3G07440.1	CDY70805	AT3G48150.1	21798944
AT3G07440.1	CDX70811	AT4G24840.1	21798944
AT3G07440.1	CDX92658	AT4G24840.1	21798944
AT3G07440.1	CDY03412	AT4G24840.1	21798944
AT3G07440.1	CDY11039	AT4G24840.1	21798944
AT3G07440.1	CDY34317	AT4G24840.1	21798944
AT3G07440.1	CDY51233	AT4G24840.1	21798944
AT3G07440.1	CDX80461	AT5G24660.1	21798944
AT3G07440.1	CDY05402	AT5G24660.1	21798944
AT3G07440.1	CDY05452	AT5G24660.1	21798944
AT3G07440.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037481.1-P	Field mustard	mitochondrion	99.57	99.57
CDX85344	Canola	mitochondrion	97.01	97.01
AT5G48530.1	Thale cress	mitochondrion	70.94	85.13
AT3G07440.1	Thale cress	mitochondrion	78.21	77.87
KRH07362	Soybean	mitochondrion	54.27	67.91
KRH66195	Soybean	mitochondrion	64.1	65.22
Solyc09g058990.2.1	Tomato	mitochondrion	62.82	60.49
GSMUA_Achr2P06060_001	Banana	nucleus	38.89	57.23
HORVU1Hr1G058580.1	Barley	mitochondrion	54.27	57.21
TraesCS1D01G232300.1	Wheat	mitochondrion	53.42	56.31
TraesCS1A01G229700.1	Wheat	mitochondrion	54.27	56.19
TraesCS1B01G244400.2	Wheat	mitochondrion	53.85	55.75
EES05056	Sorghum	mitochondrion	56.41	44.0
Zm00001d016490_P001	Maize	mitochondrion	55.56	43.33
VIT_00s0337g00070.t01	Wine grape	mitochondrion	14.53	36.56
Os02t0478500-01	Rice	nucleus	55.98	36.09

Protein Annotations

EnsemblPlants:CDX86300	EnsemblPlantsGene:GSBRNA2T00144413001	PANTHER:PTHR36031	ProteinID:CDX86300	ProteinID:CDX86300.1	SEG:seg
UniParc:UPI0004EEF73E	MapMan:35.2	:	:	:	:

Description

BnaA06g30170D

Coordinates

chrLK031845:+:822783..824427

Molecular Weight (calculated)

28421.1 Da

IEP (calculated)

9.789

GRAVY (calculated)

-1.463

Length

234 amino acids

Sequence
(BLAST)

001: MLSVAKRLVS ASPSLRNGAP LLQFFRTEAG QPRRRTKSHS PPLKKKEEKS EWWIVDGEMH EIGDHVPLRE RFTIPRDNIP NRRRKQLREQ FMRRTRLVLK
101: ESEHEPWCKK YMELYNELRE NWERLYWDEG YSKKIARDHA NYESAEEDDE DFNPYRNRRP FNDPTKEQGF VNRTTQQGDG NWDKVNQIRD KFEYDRERRM
201: REKAFAPMNA APDARDSNWN AQRQPFDAER YTRD

Best Arabidopsis Sequence Match ( AT3G07440.2 )
(BLAST)

001: MNFVVRRVGS ILPSIRHGGV SQIRLARTEA GQPRRRNKLP SLPLKKKEEK SEWWIVDGEM HEIGDHVPPR ERFTIPRDNI PNKRRKQLRD QFMRRTRLVL
101: KESEHEPWCK KYMELYNELR ENWERLYWDE GYSKKLASDH ANYESAEEDD EDFNPYRNRR SFSDQTKEQG FNRTTQGDNW EKVSQIRDKF EYDRERRMRD
201: KAFAPMNAAP ESQESRDLNW NAQRRPFDPD RFARD

Arabidopsis Description

F21O3.15 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.