Factsheet for VIT_00s0337g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
peroxisome 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_16s0098g00600.t01
VIT_17s0000g01560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07440.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT3G07440.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT3G07440.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT3G07440.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66195	Soybean	mitochondrion	45.16	18.26
GSMUA_Achr2P06060_001	Banana	nucleus	31.18	18.24
KRH07362	Soybean	mitochondrion	35.48	17.65
Solyc09g058990.2.1	Tomato	mitochondrion	44.09	16.87
CDX85344	Canola	mitochondrion	38.71	15.38
AT3G07440.1	Thale cress	mitochondrion	37.63	14.89
Bra037481.1-P	Field mustard	mitochondrion	36.56	14.53
CDX86300	Canola	mitochondrion	36.56	14.53
TraesCS1D01G232300.1	Wheat	mitochondrion	34.41	14.41
HORVU1Hr1G058580.1	Barley	mitochondrion	34.41	14.41
TraesCS1B01G244400.2	Wheat	mitochondrion	34.41	14.16
TraesCS1A01G229700.1	Wheat	mitochondrion	34.41	14.16
Zm00001d016490_P001	Maize	mitochondrion	33.33	10.33
EES05056	Sorghum	mitochondrion	33.33	10.33
AT5G48530.1	Thale cress	mitochondrion	21.51	10.26
Os02t0478500-01	Rice	nucleus	35.48	9.09
VIT_00s2171g00010.t01	Wine grape	mitochondrion	3.23	1.85

Protein Annotations

ArrayExpress:VIT_00s0337g00070	EMBL:FN596768	EnsemblPlants:VIT_00s0337g00070.t01	EnsemblPlantsGene:VIT_00s0337g00070	EntrezGene:100854262	EntrezGene:LOC100854262
PANTHER:PTHR36031	ProteinID:CCB62800	ProteinID:CCB62800.1	RefSeq:XP_003635243	RefSeq:XP_003635243.1	UniParc:UPI000210ABC8
UniProt:F6I782	wikigene:100854262	wikigene:LOC100854262	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrUn:-:24073724..24075183

Molecular Weight (calculated)

11068.9 Da

IEP (calculated)

9.189

GRAVY (calculated)

-0.966

Length

93 amino acids

Sequence
(BLAST)

1: MLNTWIWVHI GHVYARCRAF FFSEGQELAR NSQGDSWERV SQIRDKFEYD RERRMREKAF APMTGGMAPG SHQSVSRNQR FDAQRYFSQS ESE

Best Arabidopsis Sequence Match ( AT3G07440.2 )
(BLAST)

001: MNFVVRRVGS ILPSIRHGGV SQIRLARTEA GQPRRRNKLP SLPLKKKEEK SEWWIVDGEM HEIGDHVPPR ERFTIPRDNI PNKRRKQLRD QFMRRTRLVL
101: KESEHEPWCK KYMELYNELR ENWERLYWDE GYSKKLASDH ANYESAEEDD EDFNPYRNRR SFSDQTKEQG FNRTTQGDNW EKVSQIRDKF EYDRERRMRD
201: KAFAPMNAAP ESQESRDLNW NAQRRPFDPD RFARD

Arabidopsis Description

F21O3.15 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.