Factsheet for Zm00001d016490_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012851_P001
Zm00001d017475_P002
Zm00001d034842_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07440.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT3G07440.1	Zm00001d012851_P001	AT4G24840.1	21798944
AT3G07440.1	Zm00001d034842_P001	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05056	Sorghum	mitochondrion	90.33	90.33
TraesCS1D01G232300.1	Wheat	mitochondrion	59.0	79.73
HORVU1Hr1G058580.1	Barley	mitochondrion	59.0	79.73
TraesCS1B01G244400.2	Wheat	mitochondrion	59.33	78.76
TraesCS1A01G229700.1	Wheat	mitochondrion	59.0	78.32
GSMUA_Achr2P06060_001	Banana	nucleus	34.33	64.78
VIT_00s2171g00010.t01	Wine grape	mitochondrion	33.67	62.35
KRH07362	Soybean	mitochondrion	37.67	60.43
Os02t0478500-01	Rice	nucleus	72.0	59.5
AT5G48530.1	Thale cress	mitochondrion	37.33	57.44
CDX86300	Canola	mitochondrion	43.33	55.56
Bra037481.1-P	Field mustard	mitochondrion	43.33	55.56
KRH66195	Soybean	mitochondrion	42.33	55.22
CDX85344	Canola	mitochondrion	43.0	55.13
AT3G07440.1	Thale cress	mitochondrion	43.0	54.89
Solyc09g058990.2.1	Tomato	mitochondrion	42.67	52.67
VIT_00s0337g00070.t01	Wine grape	mitochondrion	10.33	33.33

Protein Annotations

EMBL:BT038513	EnsemblPlants:Zm00001d016490_P001	EnsemblPlants:Zm00001d016490_T001	EnsemblPlantsGene:Zm00001d016490	EntrezGene:100276742	PANTHER:PTHR36031
ProteinID:AQK70930.1	UniParc:UPI00017B6DF2	UniProt:B4FN25	MapMan:35.2	:	:

Description

Os02g0478550 protein

Coordinates

chr5:+:164550689..164555232

Molecular Weight (calculated)

36029.2 Da

IEP (calculated)

9.202

GRAVY (calculated)

-1.491

Length

300 amino acids

Sequence
(BLAST)

001: MLRCAYTQRR WAHRRGGFVT GSTGWSKPPP PGLGRAAGVG TKKSEWWTVD GEMHEIGESV PHRERFAIPR DNLPNRRRKQ MREQFMRRTR LVLKDSEHET
101: WCKNYMELYQ ELRENWERLY WDEGYSKKIA ESHANYDSAE EDDIDFSPYS RRRQSNVEPN KDLGFGVNKR GETWERVTQI RDKFEYDRER RMRERAFAPM
201: NTENNYARRD PRFRSQDDSS FAHTNMSDDF GLHVQTFGNR SDQSYENESN FRNKRDSSFQ HEPSDRNQRN LNIQNEPSFR NHRYPDFQNQ GGTRSQTFDE

Best Arabidopsis Sequence Match ( AT3G07440.2 )
(BLAST)

001: MNFVVRRVGS ILPSIRHGGV SQIRLARTEA GQPRRRNKLP SLPLKKKEEK SEWWIVDGEM HEIGDHVPPR ERFTIPRDNI PNKRRKQLRD QFMRRTRLVL
101: KESEHEPWCK KYMELYNELR ENWERLYWDE GYSKKLASDH ANYESAEEDD EDFNPYRNRR SFSDQTKEQG FNRTTQGDNW EKVSQIRDKF EYDRERRMRD
201: KAFAPMNAAP ESQESRDLNW NAQRRPFDPD RFARD

Arabidopsis Description

F21O3.15 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.