Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 23041469 endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
23041469
doi
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94459 | Soybean | endoplasmic reticulum, nucleus | 97.42 | 97.67 |
| VIT_14s0171g00280.t01 | Wine grape | cytosol, nucleus, plastid | 85.82 | 84.73 |
| Solyc11g068640.1.1 | Tomato | nucleus | 83.76 | 83.98 |
| AT3G01780.1 | Thale cress | cytosol | 82.65 | 81.8 |
| Bra022067.1-P | Field mustard | nucleus | 82.3 | 80.44 |
| GSMUA_Achr6P17830_001 | Banana | cytosol | 76.2 | 79.2 |
| Zm00001d004785_P001 | Maize | mitochondrion | 52.06 | 78.7 |
| Os11t0175900-01 | Rice | nucleus, plasma membrane | 52.49 | 78.64 |
| GSMUA_Achr10P... | Banana | cytosol | 75.69 | 78.59 |
| HORVU4Hr1G019290.1 | Barley | cytosol | 59.71 | 77.48 |
| EES09396 | Sorghum | cytosol | 71.31 | 71.92 |
| TraesCS4B01G094200.1 | Wheat | unclear | 71.13 | 71.75 |
| TraesCS4D01G091000.1 | Wheat | golgi | 71.13 | 71.75 |
| TraesCS4A01G222200.1 | Wheat | cytosol | 70.79 | 71.47 |
| Os02t0793100-01 | Rice | plasma membrane | 70.27 | 70.88 |
| Zm00001d053028_P001 | Maize | mitochondrion | 65.21 | 65.66 |
| Zm00001d004784_P001 | Maize | cytosol | 18.56 | 56.54 |
| CDX91928 | Canola | cytosol | 1.8 | 44.68 |
Protein Annotations
| EMBL:ACUP02009909 | EnsemblPlants:KRH06999 | EnsemblPlantsGene:GLYMA_16G060500 | EntrezGene:100787122 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0006897 | GO:GO:0008150 | InterPro:ARM-type_fold | InterPro:TPLATE | ncoils:Coil |
| PANTHER:PTHR36029 | ProteinID:KRH06999 | ProteinID:KRH06999.1 | SEG:seg | SUPFAM:SSF48371 | UniParc:UPI000233AA77 |
| UniProt:I1MLL7 | MapMan:22.1.4.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:-:5931398..5941089
Molecular Weight (calculated)
128996.0 Da
IEP (calculated)
5.479
GRAVY (calculated)
-0.129
Length
1164 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDILFAQIQA DLRSNDALRQ SGALLQALQQ SAAGRDIAVI AKTAVEEIVA APASAVCKKL AFDLIRSTRL TPDLWETVCG GIRTDLHFPD PDVAAAAVSI
0101: LAAIPSYRLA KLISDCNKEI SDCFDSPSDS LRFSATETLG CVLARDDLVT LCENNVNLLD RVSAWWARVG SNMLDRSDAV SKVAFESVGR LFQEFSSKRM
0201: SKLAGDKLVD SENSLAIRSN WVSSMVDFVW RKRRALMARS LILPVENFRT TVFPVVYSVK AVASGGVEVI RKLSKAASSS ASSNAAGAEV DSHAEKLVGV
0301: SDVVTHLAPF LVSSLEPALI YEVGINMLYL ADVPGGKPEW ASQSIIAILT LWDRLDFASA RESIVRAVVT NLHLLDLHMQ VSLFKRLLLM VKNLRAESDR
0401: MYALACICRT ALCVHLFAKE SVRRGQKPLP GTDIASLFED ARVNDDLNSI TSKSIFREEL VASLVESCFQ LSLPLPEQNN TGMESRVIGA LAYGTGYGAL
0501: NWTEPALEVV EVCRPCVKWD CDGRTYAVDC YLKLLVRLCY IYDTRGGVKR VKDGASQDQI LNETRLQNLQ RELVKDLHEV NTPRMLARLI WAIAEHIDIE
0601: GLDPLLADDP DDPLNVIISN IHKVLFNVDS TAETTNRVQD VQAVLISAQR LGSRHPRAGQ LLTKELEEFR NNPLADSVSK HQCRLILQRI KYATSHQDNK
0701: WAGVTEARGD YPFSHHKLTV QFYEASAAQD RKLEGLVHKA ILELWRPDPS ELTLLLTKGV DSTLLKVPPN AITLTGSSDP CYVEGYHLAD ASDGRITLHL
0801: KVLNLTELEL NRVDVRVGLS GALYYMDGSS QAVRQLRGLV SQDPVLCSVT VGVSHFERCA LWVQVLYYPF YGSSAVRDYE GDYAEEDPQI MRQKRSLRPE
0901: LGEPVILRCQ PYKIPLTELL LPHQISPVEF FRLWPSLPAI VEYTGTYTYE GSGFKATAAQ QYGASPFLSG LKSLSSKPFH KVCSHIIRTV AGFEMCYAAK
1001: TWHGGFLGMM IFGASEVSRN VDLGDETTTM LCKFVVRASD SSITKEIGSD LQGWLDDLTD GGAEYMPEDE VKVAAAERLR ISMERIALLK AAQPRPKTPK
1101: SDDEDEEEEY DNNKEKKDGE EDEKPKGPST LSKLTAEEAE HQALQAAVLQ EWHMICKDRT TEVN
0101: LAAIPSYRLA KLISDCNKEI SDCFDSPSDS LRFSATETLG CVLARDDLVT LCENNVNLLD RVSAWWARVG SNMLDRSDAV SKVAFESVGR LFQEFSSKRM
0201: SKLAGDKLVD SENSLAIRSN WVSSMVDFVW RKRRALMARS LILPVENFRT TVFPVVYSVK AVASGGVEVI RKLSKAASSS ASSNAAGAEV DSHAEKLVGV
0301: SDVVTHLAPF LVSSLEPALI YEVGINMLYL ADVPGGKPEW ASQSIIAILT LWDRLDFASA RESIVRAVVT NLHLLDLHMQ VSLFKRLLLM VKNLRAESDR
0401: MYALACICRT ALCVHLFAKE SVRRGQKPLP GTDIASLFED ARVNDDLNSI TSKSIFREEL VASLVESCFQ LSLPLPEQNN TGMESRVIGA LAYGTGYGAL
0501: NWTEPALEVV EVCRPCVKWD CDGRTYAVDC YLKLLVRLCY IYDTRGGVKR VKDGASQDQI LNETRLQNLQ RELVKDLHEV NTPRMLARLI WAIAEHIDIE
0601: GLDPLLADDP DDPLNVIISN IHKVLFNVDS TAETTNRVQD VQAVLISAQR LGSRHPRAGQ LLTKELEEFR NNPLADSVSK HQCRLILQRI KYATSHQDNK
0701: WAGVTEARGD YPFSHHKLTV QFYEASAAQD RKLEGLVHKA ILELWRPDPS ELTLLLTKGV DSTLLKVPPN AITLTGSSDP CYVEGYHLAD ASDGRITLHL
0801: KVLNLTELEL NRVDVRVGLS GALYYMDGSS QAVRQLRGLV SQDPVLCSVT VGVSHFERCA LWVQVLYYPF YGSSAVRDYE GDYAEEDPQI MRQKRSLRPE
0901: LGEPVILRCQ PYKIPLTELL LPHQISPVEF FRLWPSLPAI VEYTGTYTYE GSGFKATAAQ QYGASPFLSG LKSLSSKPFH KVCSHIIRTV AGFEMCYAAK
1001: TWHGGFLGMM IFGASEVSRN VDLGDETTTM LCKFVVRASD SSITKEIGSD LQGWLDDLTD GGAEYMPEDE VKVAAAERLR ISMERIALLK AAQPRPKTPK
1101: SDDEDEEEEY DNNKEKKDGE EDEKPKGPST LSKLTAEEAE HQALQAAVLQ EWHMICKDRT TEVN
0001: MDILFAQIQA DLRSNDALRQ SSALLQALQQ SAAGRDISVI AKSAVEEIVA SPASAVCKKL AFDLIRSTRL TPDLWDTVCS GVKTDLHFPD PDVTAAAVSI
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN
0101: LAALPAFSLP KLISDCSSEI ASCFDSPSDN LRFSITETLG CILARDDLVT LCENNVGLLD KVSNWWARIG QNMLDKSDAV SKVAFESVGR LFQEFDSKRM
0201: SRLAGDKLVD SENSLAIRSK WVSSMVDIVW RKRSALMARS LVLPVETFRA TVFPLVFAVK AVASGSVEVI RQLSKASSAA AAANATVVDS NAEKLVGVSD
0301: LVTHLAPFLA SSLDPALIFE VGINMLYLAD VAGGKPEWAS QSIIAILTLW DRQEFSSARE SIVRAVVTNL HLLDLHMQVS LFRRLLLMVR NLRAESDRMH
0401: ALACICRTAL CVHLFARESA RRGQKPLPGT DIISLFEDAR IKDDLNSVTS KSLFREELVA MLVESCFQLS LPLPEQKNSG MESRVIGALA YGTGYGALNW
0501: TEPALEVVEV CRPCVKWDCD GRTYAVDCYL KLLVRLCHIY DTRGGVKRLK DGASQDQILN ETRLQNLQRE LVKDLQEVNT PRILGRLIWT IAEHIDLEGL
0601: DPLLADDPDD PLNIIIANIH KVLFNLDAAA TTSNRLQDVQ AVLLCAQRMG SRHARAGQLL TKELEEYRNH AAADTVSKHQ TRLILQRIKY VSNLPERKWA
0701: GVSETRGDYP FSHHKLTVQF YEPSAAQDRK LEGLIHKAIL ELWRPKPTEL TLFLTKGVDS TSIKVPPTAY PLTGSSDPCY IEAYHLADTN DGRVTLHLKI
0801: INLTELELNR VDIRVGLSGA LYFMDGSPQA VRQLRNLVSQ DPVQCSVTVG VSQFERCGFW VQVLYYPFRG ARGEYDGDYI EEDPQIMKQK RGSKAELGEP
0901: VILRCQPYKI PLTELLLPHK ISPVEFFRLW PSLPAVAEYT GTYMYEGSGF MATAAQQYGA SPFLSGLKSL SSKPFHRVCS HIIRTVAGFQ LCYAAKTWHG
1001: GFVGMMIFGA SEVSRNMDLG DETTTMMCKF VVRASEASIT KQIESDIQGW CDDLTDGGVE YMPEDEVKAT AAEKLKISME RIALLKAAQP KKTSKIEEES
1101: ENEEEEEGEE EDDDEEVKEK KEKEEGKDKE EKKKKEKEKG TFSKLTAEET EHMALQAAVL QEWHILCKDR KYTKVN
Arabidopsis Description
TPLATEProtein TPLATE [Source:UniProtKB/Swiss-Prot;Acc:F4J8D3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.