Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57890 | Soybean | endoplasmic reticulum | 96.79 | 96.79 |
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 8.63 | 89.74 |
| KRH28498 | Soybean | cytosol | 11.78 | 89.67 |
| KRH76964 | Soybean | nucleus | 82.43 | 82.43 |
| Solyc02g090570.2.1 | Tomato | nucleus | 73.55 | 73.64 |
| Bra036092.1-P | Field mustard | cytosol | 69.3 | 72.24 |
| AT3G50590.1 | Thale cress | cytosol | 70.16 | 70.51 |
| GSMUA_Achr10P... | Banana | cytosol | 67.51 | 69.44 |
| Os09t0407950-01 | Rice | plasma membrane | 40.75 | 66.57 |
| KXG38043 | Sorghum | cytosol | 67.69 | 66.3 |
| TraesCS7D01G009600.1 | Wheat | golgi | 66.46 | 66.05 |
| TraesCS7A01G009900.1 | Wheat | cytosol | 65.47 | 66.04 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 66.46 | 65.97 |
| Zm00001d033368_P007 | Maize | cytosol | 65.47 | 64.13 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 66.28 | 63.68 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 18.13 | 60.49 |
| CDY26515 | Canola | cytosol, nucleus, plastid | 6.41 | 41.11 |
Protein Annotations
| EntrezGene:100804284 | Gene3D:2.130.10.10 | MapMan:22.1.4.4 | EMBL:ACUP02010468 | EnsemblPlantsGene:GLYMA_17G176300 | GO:GO:0000045 |
| GO:GO:0000421 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | UniProt:I1MVZ2 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | EnsemblPlants:KRH04644 | ProteinID:KRH04644 | ProteinID:KRH04644.1 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00029487B6 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr17:+:18701048..18721495
Molecular Weight (calculated)
176593.0 Da
IEP (calculated)
8.385
GRAVY (calculated)
-0.143
Length
1622 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEWTTLQHLD LRHVGRGVRP LQPHAASFHP HQALVAVAIG TYIVEFDALT GSKISALDIG APAVRMSYSP TSGHTVIAIL QDCTIRSCDF DLEQTCVLHS
0101: PEKKTEQIFS DTEVHMALTP LQPVVFFGFH KRMSVTVVGT VEGGRTPTKI KTDLKKPIVN LACHPRLPVL YVAYAEGLIR AYNIHTYAVH YTLQLDNTIK
0201: LLGAGAFAFH PTLEWIFVGD RRGTLLVWDV STERPSMIGI KQVGSQPITS VAWLPMLRLL ITLSKDGNLH VWETRVTVNP NGPPTQANFF EPAAIESIDI
0301: PRILSQQGGE AVYPLPRIKA LEFHPKSNLA ALVFANATIA DNSKNKARYS TDGRKQLFAV LQSARGSSAS VLKEKLSALG SSGVLADHQL QAQLQEHHLK
0401: GHGHLTISDI ARKAFLYSHF MEGHAKISPI SRLPLITVLD NKHHLKDFPV CQPFHLELNF FNKANRVLHY PVRAYYMDGL NLMAHNLSSG SDSIYRKLYN
0501: SIPGNVEYRA KYLIHSKKQR LFLVVYEFSG ATNEVVLYWE NSDAQVANSK SSTVKGRDAA FIGPNENQFA ILDDDKTGLG VYTLPGGASQ EAKDNDKVFE
0601: ENPTATAETS AGSIRGPTPF MFETEVDRIF STPLDSSLMF ASHGNQIGIA KLIQGYRLST STANGHYIST NSEGKKSIKL KRNEIVLQVH WQETLRGHVA
0701: GILTTQRVLI VSAALDILAG TYANFDKGLP SFRSLLWVGP ALLFSTAAAI SILGWDGKVR SILSISMPYA VLVGSLNDRL LLANPTEINP RQKKRVEIKS
0801: CLVGLLEPIL IGFATMQLSF EQKLDLSEIL YQITSRFDSL RITPRSLDIL ARGSPVCGDL AVALSQSGPQ FTQVMRGVYA VKALRFSTAL NILKDEFLRS
0901: RDYPKCPPTS HLFHRFRQLG YACIRFGQFD SAKETFEVIA DYESMLDLFI CHLNPSAMRR LAQKLEEEGL DSELRRYCDR ILRARSTGWT QGIFANFSAE
1001: SMVPKGPEWG GGNWEIKTPT AVKDIPQWEL AAEVTPYMKT DDGTIPSIIV DHIGVYLGSI KGRGNIVEVR EDSLVKVFMP TGNENKVNGL EASSVKSISK
1101: QSNVVSNTKG DSLMGLESHN QQLASSSADE QAKAEEEFKK SLYGAAADGS SSDEEGVSKM KKLRIKIRDK PIASSTVDVN KIKEATRQFK LGEGLAPPMR
1201: SRSSSGGSQD LGQILSLPPP TTGLASSTVS TPGDLFGTDA LTQSEPISQP TTGALGGGLK PGPIPEDFFQ NTIPSLQVAQ TLPPAGTFLS NYTPGVEINK
1301: TTPNQVSAFQ VNVGLQGGVP PQTIQQPVVP IESIGLPDGG VPPQSSAQAV VMPQSQLQAA QAQISSQPLD LSILGVTNSA DSGKPPQTGA QQIAVHPGQV
1401: PRGAPASVCF KTGLAHLEQN NLSDALSCFD EAFLALAKEQ SREIDIKAQA TICAQYKIAV TLLQEIGRLQ KVHGPSAISA KDEMGRLSRH LGSLPLLAKH
1501: RINCIRTAIK RNMDVQNYAY SKQMLELLLS KAPPSKQDEF RSLIDLCVQR GLTNKSIDPL EDPSQFCSAT LSRLSTIGYD VCDLCGAKFS AVTAPGCIVC
1601: GMGSIKRSDA LAGAGPVPSP FG
0101: PEKKTEQIFS DTEVHMALTP LQPVVFFGFH KRMSVTVVGT VEGGRTPTKI KTDLKKPIVN LACHPRLPVL YVAYAEGLIR AYNIHTYAVH YTLQLDNTIK
0201: LLGAGAFAFH PTLEWIFVGD RRGTLLVWDV STERPSMIGI KQVGSQPITS VAWLPMLRLL ITLSKDGNLH VWETRVTVNP NGPPTQANFF EPAAIESIDI
0301: PRILSQQGGE AVYPLPRIKA LEFHPKSNLA ALVFANATIA DNSKNKARYS TDGRKQLFAV LQSARGSSAS VLKEKLSALG SSGVLADHQL QAQLQEHHLK
0401: GHGHLTISDI ARKAFLYSHF MEGHAKISPI SRLPLITVLD NKHHLKDFPV CQPFHLELNF FNKANRVLHY PVRAYYMDGL NLMAHNLSSG SDSIYRKLYN
0501: SIPGNVEYRA KYLIHSKKQR LFLVVYEFSG ATNEVVLYWE NSDAQVANSK SSTVKGRDAA FIGPNENQFA ILDDDKTGLG VYTLPGGASQ EAKDNDKVFE
0601: ENPTATAETS AGSIRGPTPF MFETEVDRIF STPLDSSLMF ASHGNQIGIA KLIQGYRLST STANGHYIST NSEGKKSIKL KRNEIVLQVH WQETLRGHVA
0701: GILTTQRVLI VSAALDILAG TYANFDKGLP SFRSLLWVGP ALLFSTAAAI SILGWDGKVR SILSISMPYA VLVGSLNDRL LLANPTEINP RQKKRVEIKS
0801: CLVGLLEPIL IGFATMQLSF EQKLDLSEIL YQITSRFDSL RITPRSLDIL ARGSPVCGDL AVALSQSGPQ FTQVMRGVYA VKALRFSTAL NILKDEFLRS
0901: RDYPKCPPTS HLFHRFRQLG YACIRFGQFD SAKETFEVIA DYESMLDLFI CHLNPSAMRR LAQKLEEEGL DSELRRYCDR ILRARSTGWT QGIFANFSAE
1001: SMVPKGPEWG GGNWEIKTPT AVKDIPQWEL AAEVTPYMKT DDGTIPSIIV DHIGVYLGSI KGRGNIVEVR EDSLVKVFMP TGNENKVNGL EASSVKSISK
1101: QSNVVSNTKG DSLMGLESHN QQLASSSADE QAKAEEEFKK SLYGAAADGS SSDEEGVSKM KKLRIKIRDK PIASSTVDVN KIKEATRQFK LGEGLAPPMR
1201: SRSSSGGSQD LGQILSLPPP TTGLASSTVS TPGDLFGTDA LTQSEPISQP TTGALGGGLK PGPIPEDFFQ NTIPSLQVAQ TLPPAGTFLS NYTPGVEINK
1301: TTPNQVSAFQ VNVGLQGGVP PQTIQQPVVP IESIGLPDGG VPPQSSAQAV VMPQSQLQAA QAQISSQPLD LSILGVTNSA DSGKPPQTGA QQIAVHPGQV
1401: PRGAPASVCF KTGLAHLEQN NLSDALSCFD EAFLALAKEQ SREIDIKAQA TICAQYKIAV TLLQEIGRLQ KVHGPSAISA KDEMGRLSRH LGSLPLLAKH
1501: RINCIRTAIK RNMDVQNYAY SKQMLELLLS KAPPSKQDEF RSLIDLCVQR GLTNKSIDPL EDPSQFCSAT LSRLSTIGYD VCDLCGAKFS AVTAPGCIVC
1601: GMGSIKRSDA LAGAGPVPSP FG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.