Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1373g00010.t01 | Wine grape | cytosol | 8.43 | 85.26 |
| KRH28498 | Soybean | cytosol | 10.84 | 80.28 |
| Os09t0407950-01 | Rice | plasma membrane | 45.66 | 72.51 |
| KXG38043 | Sorghum | cytosol | 76.09 | 72.46 |
| TraesCS7A01G009900.1 | Wheat | cytosol | 73.24 | 71.83 |
| TraesCS7D01G009600.1 | Wheat | golgi | 74.32 | 71.81 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 74.32 | 71.73 |
| Zm00001d033368_P007 | Maize | cytosol | 74.89 | 71.32 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 21.75 | 70.58 |
| Solyc02g090570.2.1 | Tomato | nucleus | 72.42 | 70.49 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 74.0 | 69.14 |
| Bra036092.1-P | Field mustard | cytosol | 68.17 | 69.09 |
| AT3G50590.1 | Thale cress | cytosol | 69.82 | 68.22 |
| KRH04644 | Soybean | endoplasmic reticulum | 69.44 | 67.51 |
| KRH57890 | Soybean | endoplasmic reticulum | 69.25 | 67.32 |
| CDX77930 | Canola | cytosol | 69.31 | 67.01 |
| CDY17791 | Canola | cytosol | 69.31 | 66.69 |
| KRH76964 | Soybean | nucleus | 68.36 | 66.46 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 8.12 | 52.46 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 15.98 | 44.44 |
| CDY26515 | Canola | cytosol, nucleus, plastid | 6.85 | 42.69 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.1.4.4 | InterPro:Coatomer_asu_C | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030126 | EnsemblPlantsGene:GSMUA_Achr10G06510_001 | EnsemblPlants:GSMUA_Achr10P06510_001 | EnsemblPlants:GSMUA_Achr10T06510_001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | UniProt:M0RFX8 | PFAM:PF06957 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19878 |
| PANTHER:PTHR19878:SF4 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000294AC17 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
WD domain, G-beta repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G06510_001]
Coordinates
chr10:+:16839226..16867040
Molecular Weight (calculated)
172069.0 Da
IEP (calculated)
8.188
GRAVY (calculated)
-0.174
Length
1577 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEWATVQHLD LRHVGRGLKP LQPHAAVFHP TQALVAVAIG TYIIEFDALT GSKISSINIG SAVVRMSYSP TSGHAVISIL EDCTIRSCDF DTEQTLVLHS
0101: PEKRTEHISA DAEVHFALTP LQPIVFFGFH KRMSVTVVGT VEGGRPPTKI KTDLKKPIVH LACHPRLPVL YVAYADGLIR AYNIQTYAVH YTLQIDNTIK
0201: LIGASAFAFH PTLEWIFVGD RRGTLLAWDV STERPNMIGI TQAGSHPITS ISWLPTLRLL VTVSKDGTLQ VWKTRVIVNP NRQPMQANFF EHAAIENIDI
0301: TQILSLQDGE AVYPLPRIRS LAVHPKLNLA ALLFSDMAGE ENVKNRAAYT RDGRKQLFAV LQSARGSNAA VLKEKLSALG SSGILADHQL QAQLQEHHFK
0401: GQSQLTISDI ARKAFLHSHF MEGHAKRGPI SRLPVITISD AKNQLRDVPV CQPFHLELNF FNKENRVVQY PVRAFYLDSF NLMAYNISSG ADNLYKKLYS
0501: TIPGNVECSP KAMIYSSKQH LFLVVFELSG ANGVIHEVVL YWEQTDPNSV NTKGTSLKGR DAALLGPSEN QYAILDEDKT SLALYILPGG ASQEAIEKNG
0601: ALDEKSFTET RVASNQGPLQ FTFKSEVDRI FSSPLESTIL YAISGKHIAL AKLLQGYRLS TDDGQYISTK TDGKKFIKLK PNETVIQVHW QATLRGHVAG
0701: ILTSHRSVVF LFTFATAVSV LGWDSKVRTI LSISMPYSVL IGALNDRLLL VNPTDINPRQ KKGVEIRSCL VGLLEPLLIG FATMQQHFEQ KLDLSEVLYQ
0801: ISSRFDSLRI TPRSLDILAK GSPVCGDLAV SLSQAGPQFT QALRSSYATK ALRFSTALSV LKDEFLRSRD YPQCPPTSYL FHRFRQLGYA CIKYGQYDSA
0901: KETFEVISDY ESMLDLFICH LNPSAMRHLA QKLEEAAIDS ELRRSCERIL RVRSTGWTQG IFANFAAESM VPKGPEWGGG NWDIKTPINM KDIPQWELAG
1001: EVMPYMRTDD GGIPVIVADH IGVYLGAIRG RGTVVEANEK SLVKVLSAVS GENKSPFESQ LKQNKTSVIG NSKGDPMVDN LTKQLAGPTA PTDEQAKAEE
1101: EFKKALYGVV DGGSSDEDET TAKTKKIHIR IRDKPITAAT VDVNKLKEAT KQLGLGHPIR TKSLSGPPQD FSLISTQTTP DSNPNAPVTA GDMFGADTLS
1201: AQTSTQSNPM VTGMGVAAGP IPEDFFQNTI SSLQVAAALP PPGQYLSRVD QNAQVMDRSK LASSQNVLAD IGLPDGGVPP QESQQPQVSQ QSATPLAPVG
1301: LPDGGVPPQS QNLPPRSPNT VQPVDLSFLE GSNSGDNATK TSPLPPSQPT AVRPGQVPRG AAASVCFKTG LAHLEQNQLS DALSCLDEAF LALAKDQSRG
1401: SDIKAQATIC AQYKIAVAIL QEIARLQKVQ GPGALSAKDE MARLSRHLAS LPLQAKHRIN CIRTAIKRNM EVQNYAYAKQ MLDLLLSKAP PSKQEELRGL
1501: TDMCVQRGLS NKSIDPFEDP SQFCAATLSR LSTIGHDVCD LCGSKFSALS TPGCIICGMG SIKRSDSLAG PVASPFG
0101: PEKRTEHISA DAEVHFALTP LQPIVFFGFH KRMSVTVVGT VEGGRPPTKI KTDLKKPIVH LACHPRLPVL YVAYADGLIR AYNIQTYAVH YTLQIDNTIK
0201: LIGASAFAFH PTLEWIFVGD RRGTLLAWDV STERPNMIGI TQAGSHPITS ISWLPTLRLL VTVSKDGTLQ VWKTRVIVNP NRQPMQANFF EHAAIENIDI
0301: TQILSLQDGE AVYPLPRIRS LAVHPKLNLA ALLFSDMAGE ENVKNRAAYT RDGRKQLFAV LQSARGSNAA VLKEKLSALG SSGILADHQL QAQLQEHHFK
0401: GQSQLTISDI ARKAFLHSHF MEGHAKRGPI SRLPVITISD AKNQLRDVPV CQPFHLELNF FNKENRVVQY PVRAFYLDSF NLMAYNISSG ADNLYKKLYS
0501: TIPGNVECSP KAMIYSSKQH LFLVVFELSG ANGVIHEVVL YWEQTDPNSV NTKGTSLKGR DAALLGPSEN QYAILDEDKT SLALYILPGG ASQEAIEKNG
0601: ALDEKSFTET RVASNQGPLQ FTFKSEVDRI FSSPLESTIL YAISGKHIAL AKLLQGYRLS TDDGQYISTK TDGKKFIKLK PNETVIQVHW QATLRGHVAG
0701: ILTSHRSVVF LFTFATAVSV LGWDSKVRTI LSISMPYSVL IGALNDRLLL VNPTDINPRQ KKGVEIRSCL VGLLEPLLIG FATMQQHFEQ KLDLSEVLYQ
0801: ISSRFDSLRI TPRSLDILAK GSPVCGDLAV SLSQAGPQFT QALRSSYATK ALRFSTALSV LKDEFLRSRD YPQCPPTSYL FHRFRQLGYA CIKYGQYDSA
0901: KETFEVISDY ESMLDLFICH LNPSAMRHLA QKLEEAAIDS ELRRSCERIL RVRSTGWTQG IFANFAAESM VPKGPEWGGG NWDIKTPINM KDIPQWELAG
1001: EVMPYMRTDD GGIPVIVADH IGVYLGAIRG RGTVVEANEK SLVKVLSAVS GENKSPFESQ LKQNKTSVIG NSKGDPMVDN LTKQLAGPTA PTDEQAKAEE
1101: EFKKALYGVV DGGSSDEDET TAKTKKIHIR IRDKPITAAT VDVNKLKEAT KQLGLGHPIR TKSLSGPPQD FSLISTQTTP DSNPNAPVTA GDMFGADTLS
1201: AQTSTQSNPM VTGMGVAAGP IPEDFFQNTI SSLQVAAALP PPGQYLSRVD QNAQVMDRSK LASSQNVLAD IGLPDGGVPP QESQQPQVSQ QSATPLAPVG
1301: LPDGGVPPQS QNLPPRSPNT VQPVDLSFLE GSNSGDNATK TSPLPPSQPT AVRPGQVPRG AAASVCFKTG LAHLEQNQLS DALSCLDEAF LALAKDQSRG
1401: SDIKAQATIC AQYKIAVAIL QEIARLQKVQ GPGALSAKDE MARLSRHLAS LPLQAKHRIN CIRTAIKRNM EVQNYAYAKQ MLDLLLSKAP PSKQEELRGL
1501: TDMCVQRGLS NKSIDPFEDP SQFCAATLSR LSTIGHDVCD LCGSKFSALS TPGCIICGMG SIKRSDSLAG PVASPFG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.