Factsheet for GSMUA_Achr1P28020_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P10550_001
GSMUA_Achr3P27960_001
GSMUA_Achr4P05640_001
GSMUA_Achr4P11750_001
GSMUA_Achr5P19150_001
GSMUA_Achr6P17830_001
GSMUA_Achr6P29170_001
GSMUA_Achr8P13420_001
GSMUA_Achr8P14590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	GSMUA_Achr1P10550_001	AT1G04810.1	24529374
AT5G24710.1	GSMUA_Achr4P05640_001	AT1G15370.1	24529374
AT5G24710.1	GSMUA_Achr8P14590_001	AT1G15370.1	24529374
AT5G24710.1	GSMUA_Achr4P11750_001	AT1G20760.1	24529374
AT5G24710.1	GSMUA_Achr5P19150_001	AT1G20760.1	24529374
AT5G24710.1	GSMUA_Achr8P13420_001	AT1G20760.1	24529374
AT5G24710.1	GSMUA_Achr6P29170_001	AT2G05830.1	24529374
AT5G24710.1	GSMUA_Achr10P...	AT3G01780.1	24529374
AT5G24710.1	GSMUA_Achr6P17830_001	AT3G01780.1	24529374
AT5G24710.1	GSMUA_Achr10P...	AT3G50590.1	24529374
AT5G24710.1	GSMUA_Achr3P27960_001	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P21400_001	Banana	mitochondrion	88.82	84.11
KRG96637	Soybean	endoplasmic reticulum	69.57	77.08
Os01t0653800-02	Rice	plasma membrane	80.59	73.28
TraesCS3A01G236500.2	Wheat	mitochondrion	79.23	73.16
TraesCS3B01G263200.1	Wheat	golgi, unclear	79.31	73.01
KXG33009	Sorghum	mitochondrion	79.55	72.17
CDY19826	Canola	mitochondrion	71.01	71.75
KRG89827	Soybean	cytosol	19.57	71.22
TraesCS3D01G237000.1	Wheat	mitochondrion	79.15	71.04
KRG99486	Soybean	endoplasmic reticulum	17.33	69.77
KRH68370	Soybean	endoplasmic reticulum	75.32	69.75
AT5G24710.1	Thale cress	mitochondrion	75.0	68.19
Zm00001d044026_P011	Maize	mitochondrion	78.99	67.97
HORVU3Hr1G058910.1	Barley	plastid	79.23	67.9
PGSC0003DMT400046936	Potato	mitochondrion	75.24	66.76
CDX87116	Canola	mitochondrion	72.68	66.18
Solyc01g102510.2.1	Tomato	nucleus	75.32	65.76
Zm00001d011483_P004	Maize	mitochondrion	78.51	65.58
VIT_05s0094g01650.t01	Wine grape	cytosol	3.51	61.11
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	6.39	46.78

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.1.4.4	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr1G28020_001	EnsemblPlants:GSMUA_Achr1P28020_001	EnsemblPlants:GSMUA_Achr1T28020_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0S3Q9	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50294	PANTHER:PTHR45521	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000295FF52	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G28020_001]

Coordinates

chr1:-:26819770..26887382

Molecular Weight (calculated)

135295.0 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.079

Length

1252 amino acids

Sequence
(BLAST)

0001: MLRLRAFRQT NGKIVKIQLH PTYPWLVTAD NSDHVSVWNW EHRQVIYELK AGGVDERRLV GTKLEKLAEG ETEFRGKPTE AIRGGSVKQV GFYDDDVRFW
0101: QHWRNRSAAA EAPSAANQQS SAFSSPIPST RGRHFIVICC ENKAIFLDLV TMRGRDVPKQ ELDNRSLLCM EFLSRSATGD GPLVAFGGSD GVIRVLSMIT
0201: WKLVRRYTGG HKGSITCLMT FISSSGEVFL VSGASDGLLI IWSADHIHDS RELVPKLSLK AHDGGVVAVE LSRVMGSAPQ LITIGADKTL VIWDSISFRE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAI EHPTYSALTR PLCELSSLIP SQVLASNKKL RVYCMVVHPL QPHLVATGTN IGVILSELDA
0401: RALPAVAALP TPPGGREHSA VYTVERELKL LNFQLTNTTN TSLGSTGTIS ETGKSRMETE QLLVKQTKKH ISTPAPHDSF SILSISCSGK YVAIVQPDIP
0501: SFYVYKASDW SVVDSGTGRL FAWDTCGDRY ALAETSLPPR IPIIKGGSSK KAKEAAAAAA AAQAAAAAAS AASAATVQVR ILLDDGTSHV MTRSIEGRSD
0601: PVIGLHGGAL LGVAYRTSRR ISPMAATAYS TQSMSSFGAA DDPFSSKKPA VGAAPQNFQL YSWETYQPVS GLLSQPEWTA WDRTVEYCAF AYHQYIVISS
0701: LRPQFRYLGD VAIPFATCAV WHRRQLFVAT PTTIECVFVD AGVAPIDLET KRKKEEMKAQ EAQSRAFAEH GELALIAVDS PQVATSDRIS LRPPTLQVVR
0801: LASFQDAPSI PPFITLPKQH KVDGEDTVLP KEMEEKKVNE VAVAGGGVSV AATRFPPEQK RPIGPLVVVG VRDGVLWLID RYMCAHALSL SHPGIRCRCL
0901: AAYGDAVSAV KWATRLSREH HDDLAQFMLG MGYATEALHL PGISKRLEFE LAMQSNDLKR ALQCLLTMSN SRDVGQETTA ADITEILSLT AVKQENLVDA
1001: VQGIAKFAKE FLDLIDAADA TGQADIAREA LKRLASAGSV KGALQGQVLR GLALRLANHG ELTRLSGLIT NLIVAGHGQE AAFSAAVLGD NALMEKAWLD
1101: TGMLAEAVLH AHAHGRPTMR NLVQAWNKML QKELDHTPVV KTDAAAAFLA SLEEPKFTSL AEAGKKPPIE ILPPGMASLS APPITIGKKP AATATTSATA
1201: LQGPSAAAQT PPPAPIQSDP TTTPDTSNSQ TEKPLMLEAP PPLMNQTAPL RS

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.