Factsheet for GSMUA_Achr6P21400_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P10550_001
GSMUA_Achr3P27960_001
GSMUA_Achr4P05640_001
GSMUA_Achr4P11750_001
GSMUA_Achr5P19150_001
GSMUA_Achr6P17830_001
GSMUA_Achr6P29170_001
GSMUA_Achr8P13420_001
GSMUA_Achr8P14590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	GSMUA_Achr1P10550_001	AT1G04810.1	24529374
AT5G24710.1	GSMUA_Achr4P05640_001	AT1G15370.1	24529374
AT5G24710.1	GSMUA_Achr8P14590_001	AT1G15370.1	24529374
AT5G24710.1	GSMUA_Achr4P11750_001	AT1G20760.1	24529374
AT5G24710.1	GSMUA_Achr5P19150_001	AT1G20760.1	24529374
AT5G24710.1	GSMUA_Achr8P13420_001	AT1G20760.1	24529374
AT5G24710.1	GSMUA_Achr6P29170_001	AT2G05830.1	24529374
AT5G24710.1	GSMUA_Achr10P...	AT3G01780.1	24529374
AT5G24710.1	GSMUA_Achr6P17830_001	AT3G01780.1	24529374
AT5G24710.1	GSMUA_Achr10P...	AT3G50590.1	24529374
AT5G24710.1	GSMUA_Achr3P27960_001	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P28020_001	Banana	mitochondrion	84.11	88.82
KRG96637	Soybean	endoplasmic reticulum	68.68	80.35
Os01t0653800-02	Rice	plasma membrane	78.67	75.53
TraesCS3A01G236500.2	Wheat	mitochondrion	77.38	75.44
TraesCS3B01G263200.1	Wheat	golgi, unclear	77.53	75.37
CDY19826	Canola	mitochondrion	70.5	75.22
KRG89827	Soybean	cytosol	19.44	74.71
KXG33009	Sorghum	mitochondrion	77.76	74.49
KRG99486	Soybean	endoplasmic reticulum	17.32	73.63
TraesCS3D01G237000.1	Wheat	mitochondrion	77.53	73.48
KRH68370	Soybean	endoplasmic reticulum	74.21	72.56
AT5G24710.1	Thale cress	mitochondrion	74.66	71.68
HORVU3Hr1G058910.1	Barley	plastid	77.53	70.16
Zm00001d044026_P011	Maize	mitochondrion	77.0	69.97
CDX87116	Canola	mitochondrion	72.16	69.38
PGSC0003DMT400046936	Potato	mitochondrion	73.53	68.89
Solyc01g102510.2.1	Tomato	nucleus	73.6	67.85
Zm00001d011483_P004	Maize	mitochondrion	76.85	67.78
VIT_05s0094g01650.t01	Wine grape	cytosol	3.56	65.28
Bra028077.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, plastid	6.2	47.95

Protein Annotations

Gene3D:2.130.10.10	MapMan:22.1.4.4	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G21400_001	EnsemblPlants:GSMUA_Achr6P21400_001	EnsemblPlants:GSMUA_Achr6T21400_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0T8Y8	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR45521
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296C241	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G21400_001]

Coordinates

chr6:+:17668577..17699084

Molecular Weight (calculated)

142714.0 Da

IEP (calculated)

8.040

GRAVY (calculated)

-0.115

Length

1322 amino acids

Sequence
(BLAST)

0001: MLRLRAFRQT NGKIVKIQLH PTHPWLVTSD DSDHVSVWDW EHRQVIYELK AGGVDERRLV GTKLEKLAEG ETEPKGKPTE AIRGGSVKQV GFYDDDVRYW
0101: QHWRNRSAAA EAPSAANQHS SAFSSPVPST RGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNRSLLCM EFLSRSATGD GPLVAFGGSD GVIRVLSMIT
0201: WKLIRRYTGG HKGSITCLMT FVASSGEAFL VSGASDGLLI LWSADHIHDS RELVPKLSLK AHDGGVVAVE LSRVMGSAPQ LITIGADKTL AIWDTISFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWAI EHPTYSALTR PLCELSSLVP PQVLAPNKKL RVYCMVAHPL QPHLVATGTN IGVILSEFDA
0401: RALPAVTALA TPPGSREHSA VYVVERELKL LNFQLSNTAN PSLGSTGTIS ETGRSRTETE QLLVKQTKKH ISTPAPHDSY SILSVSSSGK YVAIVWPDIP
0501: SFYVYKASDW SVVDSGTGKL FAWDTCRDRY ALVETALPPR IPLIKGGSSK KAKEAAAAAA QAAAAAASAA SAATVQVRIL LDDGTSHVMA RSIEGRSDPV
0601: IGLHGGALLG VAYRTSRRIS PVAATAISTI QSMPLSGFGN SGAMSSFAAA DDPFSSNKPA AEAAPQNFQL YSWETYQPVS GLLSQPEWTA WDQTVEYCAF
0701: AYHQYIIISS LRPQYRYLGD VAISFATGAV WHRRQLFVAT PTTIECVFVD AGVAPIDLET KKKKEETKAR ETQSRVFAEH GELALITVDS PQVTTSERIS
0801: LRPPMLQVVR LASFQHAPSI PPFITLPKQS RVDGEDAVLP KEMEERKVNE VAVAGGGVSV AVTRFPPEQK RPIGPLILVG VRDGVLWLID RHMCAHALSL
0901: SHPGIRCRCL AAYGDAVSAV KWATRLSREH HDDLAQFMLG MGYATEALHL PGISKRLEFD LAMQSNDLKR ALQCLLTMSN SRDVGQETTA ADITEILSLT
1001: AVKQENLVDA VQGIAKFAKE FLDLIDAADA TGQADIAREA LKRLAAAGSV KGALKGQVLR GLALRLANHG ELTRLSGLIN NLIVAGHGRE AAFSAAVLGD
1101: NALMEKAWQD TGMLAEAVLH AHAHGRPTLK NLVQTWNKML QKELEHAPSV KTDAASAFLA SLEDPKFTSL AEAGKKPPIE ILPPGMASLS APPITINKKP
1201: PASAATSQGP STATQSPEPT PVQSDLATSQ NTLNTQTDKP LMLEAPPPAD QSNGTPPVVE AVSSTNASPE VTDFGVCIGH HGSLASQSSV SCSGFVELQS
1301: GRKRVGQLEH YRTIAWKEIT GI

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.