CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77930
CDX87673
CDX88623
CDX96625
CDY01356
CDY04295
CDY09484
CDY11868
CDY17791
CDY25907
CDY29508
CDY31869
CDY33397
CDY33644
CDY36552
CDY37153
CDY38299
CDY39638
CDY55980
CDY66337
CDY70356
CDY71251

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24710.1	CDY36552	AT1G15370.1	24529374
AT5G24710.1	CDY39638	AT1G15370.1	24529374
AT5G24710.1	CDY55980	AT1G15370.1	24529374
AT5G24710.1	CDY71251	AT1G15370.1	24529374
AT5G24710.1	CDX96625	AT1G20760.1	24529374
AT5G24710.1	CDY01356	AT1G20760.1	24529374
AT5G24710.1	CDY29508	AT1G20760.1	24529374
AT5G24710.1	CDY31869	AT1G20760.1	24529374
AT5G24710.1	CDY33644	AT1G20760.1	24529374
AT5G24710.1	CDY66337	AT1G20760.1	24529374
AT5G24710.1	CDY04295	AT2G05830.1	24529374
AT5G24710.1	CDY09484	AT2G05830.1	24529374
AT5G24710.1	CDY33397	AT2G05830.1	24529374
AT5G24710.1	CDY70356	AT2G05830.1	24529374
AT5G24710.1	CDX87673	AT3G01780.1	24529374
AT5G24710.1	CDY37153	AT3G01780.1	24529374
AT5G24710.1	CDX77930	AT3G50590.1	24529374
AT5G24710.1	CDY17791	AT3G50590.1	24529374
AT5G24710.1	CDX88623	AT5G57460.1	24529374
AT5G24710.1	CDY11868	AT5G57460.1	24529374
AT5G24710.1	CDY25907	AT5G57460.1	24529374
AT5G24710.1	CDY38299	AT5G57460.1	24529374

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19826	Canola	mitochondrion	88.07	97.74
AT5G24710.1	Thale cress	mitochondrion	89.45	89.32
KRG96637	Soybean	endoplasmic reticulum	66.25	80.62
Bra010799.1-P	Field mustard	cytosol	17.16	76.87
KRH68370	Soybean	endoplasmic reticulum	72.36	73.59
KRG89827	Soybean	cytosol	18.25	72.97
GSMUA_Achr1P28020_001	Banana	mitochondrion	66.18	72.68
GSMUA_Achr6P21400_001	Banana	mitochondrion	69.38	72.16
KRG99486	Soybean	endoplasmic reticulum	16.15	71.38
HORVU1Hr1G042290.1	Barley	mitochondrion	4.0	70.51
VIT_05s0094g01650.t01	Wine grape	cytosol	3.64	69.44
TraesCS3A01G236500.2	Wheat	mitochondrion	68.07	69.03
PGSC0003DMT400046936	Potato	mitochondrion	70.62	68.82
Os01t0653800-02	Rice	plasma membrane	68.87	68.77
KXG33009	Sorghum	mitochondrion	68.95	68.7
TraesCS3B01G263200.1	Wheat	golgi, unclear	67.93	68.68
Solyc01g102510.2.1	Tomato	nucleus	70.33	67.43
TraesCS3D01G237000.1	Wheat	mitochondrion	68.07	67.1
Zm00001d044026_P011	Maize	mitochondrion	68.44	64.67
HORVU3Hr1G058910.1	Barley	plastid	68.22	64.2
Zm00001d011483_P004	Maize	mitochondrion	68.22	62.58
VIT_08s0056g00040.t01	Wine grape	cytosol	72.95	54.99
Os05t0297001-01	Rice	extracellular	2.25	44.29
Os01t0653350-00	Rice	mitochondrion	5.38	32.31

Protein Annotations

EnsemblPlants:CDX87116	EnsemblPlantsGene:GSBRNA2T00146020001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR017986	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	ncoils:Coil
PANTHER:PTHR45521	PFscan:PS50082	PFscan:PS50294	ProteinID:CDX87116	ProteinID:CDX87116.1	ScanProsite:PS00678
SEG:seg	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDCB02	MapMan:22.1.4.4	:

Description

BnaC09g04310D

Coordinates

chrLK031849:+:558126..565762

Molecular Weight (calculated)

147797.0 Da

IEP (calculated)

6.492

GRAVY (calculated)

-0.183

Length

1375 amino acids

Sequence
(BLAST)

0001: MLRARAFRQT NNKIVKIQVH PTHPWLVTAD DTDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG DSDYKGKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVDHLT SGFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKS ELDNRSLVCM EFLTRSSAGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTAG HKGSIYCLMN FMASSGEALL VSGGSDGLLI LWNADQGTDS RDLVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHKKL RVFCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAFLP ALSGSRENSA VYILGRELKL LNFQISNTAN PSLGNNALSE SGVSKLDAGE QLTVKQTKKK SVASVPHDSY SVLSVSSSGK YVAVVWPDIL
0501: YFSIYKVSDW SIVDSGSARI LAWDTCRDRF AILESVLPQR IPMIPKGGSS RKAKEAAAAA AQVAAAANAA SSASVQVRIL LDDGTSNILM RSVGGRSEPV
0601: IGLHGGALLG IGYRTSRRIS PVSATAISTI QSMPLSGFGN SNVSSFSSYD DGSSQRSTES APLNYQLYSW ENFEPVGGML PQPEWTAWDK TVEYCAFAYQ
0701: QYMVISSLRP QYRYLGNVAI SHATGAVWHR RQLFVATQTT IECVFVDAGV TEIDIETRKM KEEMKLKEAQ ARAVAEHGEL ALITVEGSQS SKQEKISLRA
0801: PLLQVVRLAS FQNAPSVPPF LSLPRQSRGD GDDMDERRAS EVAVGGGGVS VAVTRFPVEQ KRPVGPLVVA GVRDGVLWLI DRYMCAHAIS LNHPGIRCRC
0901: LAAYGDAISA VKWASRLGRE HHDDLAQFML GMGYATEALH LPGISKRLEF DLAMQSNDLK RALHCLLTMS NSRDIGQDGL GLDLSDILSL TAEKKEDVVE
1001: AVEGIVKFAK EFLDLIDAAD ATGNTNVARE ALKRLATAGS VKGALQGHEL RGLSLRLANH GELTRLSGLI NNLISIGLGR ESAFSAAVLG DNALMEKAWQ
1101: DTGMLAEAVL HAHAHGRPSL KNLVQAWNKT LQKEVEQVSS TKTDAASAFL ASLEDPKLTS LSDASKKPPI EILPPGMSSI FASISAPKKP LPTMKTPQPE
1201: PTKPLAIEEP AKPLAIEAPP PSSEETPQAE SAPETATDSE SAAAETAADS EPAAPETAAA ESAAPETAAA AESAAPGTAA GAEPTAPESA AVAESAAPET
1301: AAVTSVEDKS DPSSAPKTET AVATEDNNQT MPPPPPPETT TTTTVKPTEN AETERKQVTY PPIRSQPIDF DFLND

Best Arabidopsis Sequence Match ( AT5G24710.1 )
(BLAST)

0001: MLRARAFRQT NGKIVKIQVH PTHPWLVTAD DSDHVSVWNW EHRQVIYELK AGGVDERRLV GAKLEKLAEG ESDYKAKPTE AIRGGSVKQV KFYDDDVRYW
0101: QLWRNRSAAA ESPSAVNHLT SAFTSPAPST KGRHFLVICC ENKAIFLDLV TMRGRDVPKQ ELDNKSLLCM EFLSRSSGGD GPLVAFGSTD GVIRVLSMIT
0201: WKLARRYTGG HKGSIYCLMN FMASSGEALL VSGGSDGLLV LWSADHGADS RELVPKLSLK AHDGGVVAVE LSRVSGSAPQ LITIGADKTL AIWDTMTFKE
0301: LRRIKPVPKL ACHSVASWCH PRAPNLDILT CVKDSHIWSI EHPTYSALTR PLCELSSLVP PQVLATHRKL RVYCMVAHPL QPHLVATGTN VGIIVSEFDP
0401: RAIPSAAPLP ALPGSRENSA IYILGRELKL LNFQLSNTAN PSLGNNSALS ESGLSKGDPG EQLTVKQTKK QIVAPVPHDS YSVLSVSSSG KYVAVVWPDI
0501: LYFSIYKVSD WSIVDSGSAR LLAWDTCRDR FAILESVLPH RMPIIPKGGS SRKAKEAAAA AAQAAAAASA ASSASVQVRI LLDDGTSNIL MRSVGGRSEP
0601: VIGLHGGALL GIGYRTSRRI SPVAATAIST IQSMPLSGFG NSNVSSFSSY DDGFSSQKSA ESAPLNYQLY SWENFEPVGG MLPQPEWTAW DQTVEYCAFA
0701: YQQYMVISSL RPQYRYLGDV AIAHATGAVW HRRQLFVATP TTIECVFVDA GVSEIDIETR KMKEEMKLKE AQARAVAEHG ELALITVEGS QAAKQERISL
0801: RPPMLQVVRL ASFQNAPSVP PFLSLPRQSR GDSDDIMDER RVNEVAVGGG GVSVAVTRFP VEQKRPVGPL VVAGVRDGVL WLIDRYMCAH AISLNHPGIR
0901: CRCLAAYGDA VSAVKWASRL GREHHDDLAQ FMLGMGYATE ALHLPGISKR LEFDLAMQSN DLKRALHCLL TMSNSKDIGQ DGVGLDLSDI LSLTATKKED
1001: VVEAVEGIVK FAKEFLDLID AADATGHADI AREALKRLAT AGSVKGALQG HELRGLSLRL ANHGELTRLS GLVNNLISIG LGRESAFSAA VLGDNALMEK
1101: AWQDTGMLAE AVLHAHAHGR PTLKNLVQAW NKTLQKEVEK APSSKTDAAS AFLASLEDPK LTSLSDASRK PPIEILPPGM SSIFASITAP KKPLLTQKTA
1201: QPEVAKPLAL EEPTKPLAIE APPSSEAPQT ESAPETAAAA ESPAPETAAV AESPAPGTAA VAEAPASETA AAPVDGPVTE TVSEPPPVEK EETSLEEKSD
1301: PSSTPNTETA TSTENTSQTT TTPESVTTAP PEPITTAPPE TVTTTAVKPT ENAATERRVT NYPPIRSQPI DFDFLNG

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KIH8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.