Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96625 | Canola | cytosol | 88.63 | 89.9 |
| CDY31869 | Canola | cytosol | 83.8 | 84.06 |
| CDY66337 | Canola | cytosol | 83.5 | 83.84 |
| CDY29508 | Canola | cytosol | 83.6 | 83.69 |
| CDY01356 | Canola | cytosol | 82.19 | 83.37 |
| AT1G20760.1 | Thale cress | cytosol | 85.41 | 83.32 |
| KRH60909 | Soybean | endoplasmic reticulum | 52.92 | 49.53 |
| KRH51589 | Soybean | endoplasmic reticulum | 52.41 | 48.42 |
| VIT_18s0122g01080.t01 | Wine grape | cytosol | 48.99 | 48.41 |
| PGSC0003DMT400025666 | Potato | cytosol | 7.55 | 46.3 |
| Solyc02g082530.1.1 | Tomato | nucleus | 4.23 | 43.3 |
| GSMUA_Achr5P19150_001 | Banana | endoplasmic reticulum | 38.93 | 40.87 |
| EER92924 | Sorghum | cytosol | 42.76 | 40.67 |
| Os03t0130500-01 | Rice | plasma membrane | 43.06 | 40.07 |
| GSMUA_Achr8P13420_001 | Banana | cytosol | 38.13 | 39.81 |
| TraesCS4D01G321600.1 | Wheat | cytosol | 42.56 | 38.84 |
| TraesCS5A01G497000.1 | Wheat | cytosol | 42.25 | 38.75 |
| TraesCS4B01G324500.1 | Wheat | cytosol | 41.95 | 38.72 |
| HORVU4Hr1G082280.2 | Barley | cytosol | 42.66 | 37.49 |
| Solyc04g082560.2.1 | Tomato | cytosol | 44.67 | 36.16 |
| GSMUA_Achr4P11750_001 | Banana | cytosol | 38.93 | 36.07 |
| CDY00394 | Canola | cytosol | 40.54 | 35.23 |
| CDY08192 | Canola | cytosol | 40.85 | 34.91 |
| CDY04654 | Canola | cytosol | 41.15 | 34.75 |
| Zm00001d048338_P035 | Maize | cytosol | 37.93 | 34.75 |
| Os06t0728600-00 | Rice | plasma membrane | 31.19 | 34.68 |
| CDY38814 | Canola | cytosol | 39.64 | 34.44 |
| CDX96582 | Canola | cytosol | 39.44 | 34.3 |
| Zm00001d027503_P036 | Maize | cytosol | 36.32 | 34.02 |
| CDY01320 | Canola | cytosol | 40.34 | 33.95 |
| Zm00001d014862_P002 | Maize | cytosol | 39.54 | 32.45 |
| Zm00001d037125_P009 | Maize | cytosol | 39.44 | 32.45 |
| EER89004 | Sorghum | cytosol | 39.64 | 32.14 |
| TraesCS7B01G476800.3 | Wheat | cytosol | 39.13 | 29.95 |
| TraesCS7D01G539600.2 | Wheat | cytosol | 38.83 | 29.88 |
| TraesCS7A01G553100.1 | Wheat | cytosol | 38.83 | 29.83 |
| HORVU7Hr1G121230.4 | Barley | cytosol | 37.53 | 28.78 |
| CDY25408 | Canola | cytosol | 10.06 | 19.05 |
| CDY29816 | Canola | cytosol | 9.96 | 18.82 |
| CDY50093 | Canola | cytosol | 9.86 | 18.46 |
| CDY16689 | Canola | cytosol | 9.76 | 17.77 |
| CDX94536 | Canola | cytosol | 9.76 | 17.73 |
| CDY50090 | Canola | cytosol | 9.86 | 17.19 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:22.1.4.7 | GO:A0A078H834 | UniProt:A0A078H834 | EnsemblPlants:CDY33644 | ProteinID:CDY33644 |
| ProteinID:CDY33644.1 | ncoils:Coil | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:EH_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00054995001 | InterPro:IPR000261 |
| InterPro:IPR002048 | PFAM:PF12763 | PFAM:PF13202 | ScanProsite:PS00018 | PFscan:PS50031 | PFscan:PS50222 |
| PANTHER:PTHR11216 | PANTHER:PTHR11216:SF116 | SMART:SM00027 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI0004EE2478 |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g19440DBnaC08g19440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H834]
Coordinates
chrLK032319:+:168095..172915
Molecular Weight (calculated)
106839.0 Da
IEP (calculated)
4.865
GRAVY (calculated)
-0.723
Length
994 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQNPNMDQ FEAYFNRADL DGDGRISGAE AVGFFQGSGL PKPVLFQIWS LSDRSGSGFL GRQDFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPA
101: PKINLSAIPA PQPNPPATTA RPVSSPGHQN QVPNALPGQF QPVLVGSVTR PPQAAPTSAP GPAGSEYRPS ALPGQFQPGP AGSVTRPPQA VPTIASGPGG
201: STLNLNNYGY SSGFGGGSLA APSPGFKPES HIDPKALVVS GNGGDMFSSF QQKPQPTLSG SSITSAIVPA SAGTQPPLKP NALDSLQSTF SMLPAGNQPQ
301: QPRPAASSQG PSSGLPHGSA VGSGHPTPAG NNQPPWPKMK PSDVQKYTKV FIEVDSDRDG RITGEQARNL FLSWRLPREV LKHVWELSDQ DNDTMLSLRE
401: FCISLYLMER YKEGRPLPPA LPSSIMYDET LLSISGAPIR GYANAGWGSG RGFVKQPVMG ARPTTPPTGM RPPVPAPAPH PGSGIASNQE RNQAPALDDP
501: FASHLGNGYS ASSNPPETAT DGEKVDEKKN AYMDSREKLE YYRTKMQDIV LYKSRCDNRL NEISEGASAD KREAEMLAKK YEEKYKQVAE LGSKLTIEEA
601: RFREIEGRKM ELSQAIVNME QGGSADGLLQ VRADRIQSDL EELMKALTER CKKHGLEVKS KALVDLPAGW QPGIQEGAAL WDEEWDKFED EGFGNEITFD
701: KSKEQNSSGE KENGTVDDGT SGPPDSPTHL DENYGPFSET SDRHHESEGE SGRSPGDSPV SRTATEVPSP DYAREKSSEF FDDSNWASAF DTNEDVDSVW
801: GFDASTSQDG DYFGENSGRA DSPTSRSFAG QRKSTFGFDD SVPSTPLSRF GNSPPRFSDA SIRDNNNFDS FSRFDSFNHS EAGGAGFSSS QPERLSRFDS
901: INSSKDFGGA AFSRFDSINS SRDFAGGAEK LSRFDSINSS RDFGGPSLSR FDSMNSTKDF SGSHGYSFDD ADPFGSTGPF KVSFDDKSPK KNSF
101: PKINLSAIPA PQPNPPATTA RPVSSPGHQN QVPNALPGQF QPVLVGSVTR PPQAAPTSAP GPAGSEYRPS ALPGQFQPGP AGSVTRPPQA VPTIASGPGG
201: STLNLNNYGY SSGFGGGSLA APSPGFKPES HIDPKALVVS GNGGDMFSSF QQKPQPTLSG SSITSAIVPA SAGTQPPLKP NALDSLQSTF SMLPAGNQPQ
301: QPRPAASSQG PSSGLPHGSA VGSGHPTPAG NNQPPWPKMK PSDVQKYTKV FIEVDSDRDG RITGEQARNL FLSWRLPREV LKHVWELSDQ DNDTMLSLRE
401: FCISLYLMER YKEGRPLPPA LPSSIMYDET LLSISGAPIR GYANAGWGSG RGFVKQPVMG ARPTTPPTGM RPPVPAPAPH PGSGIASNQE RNQAPALDDP
501: FASHLGNGYS ASSNPPETAT DGEKVDEKKN AYMDSREKLE YYRTKMQDIV LYKSRCDNRL NEISEGASAD KREAEMLAKK YEEKYKQVAE LGSKLTIEEA
601: RFREIEGRKM ELSQAIVNME QGGSADGLLQ VRADRIQSDL EELMKALTER CKKHGLEVKS KALVDLPAGW QPGIQEGAAL WDEEWDKFED EGFGNEITFD
701: KSKEQNSSGE KENGTVDDGT SGPPDSPTHL DENYGPFSET SDRHHESEGE SGRSPGDSPV SRTATEVPSP DYAREKSSEF FDDSNWASAF DTNEDVDSVW
801: GFDASTSQDG DYFGENSGRA DSPTSRSFAG QRKSTFGFDD SVPSTPLSRF GNSPPRFSDA SIRDNNNFDS FSRFDSFNHS EAGGAGFSSS QPERLSRFDS
901: INSSKDFGGA AFSRFDSINS SRDFAGGAEK LSRFDSINSS RDFGGPSLSR FDSMNSTKDF SGSHGYSFDD ADPFGSTGPF KVSFDDKSPK KNSF
0001: MAGQNPNMDQ FEAYFKRADL DGDGRISGAE AVGFFQGSGL SKQVLAQIWS LSDRSHSGFL DRQNFYNSLR LVTVAQSKRD LTPEIVNAAL NTPAAAKIPP
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
0101: PKINLSAIPA PRPNPAATTV GPVSGFGGPG APNAIVNQNY FPPQQNQQMR PNQGISGLTS LRPAAGPEYR PSALSGQFQP VPVGSVTHPP QPVPTSVSGP
0201: GSSTFNLNSL YAGAGNTSGY SSGFGGGSLA APSPGLKQES HIDPKALVVS GNGGDMFSSF QQKQEPTLSN SSISSAIVPT SAGIQPPTKP NALDSLQSTF
0301: SMLPSGNQLQ QPRPAASSQP AVSSQGPSSG LPPGSAVGSG HSTPAGNNQP PWPKMKPSDV QKYTKVFMEV DSDKDGKITG EQARNLFLSW RLPREVLKHV
0401: WELSDQDNDT MLSLREFCIS LYLMERYREG RPLPTALPSS IMFDETLLSI SGAPSHGYAN AGWGSGQGFV QQPGMGARPI TPTTGMRPPV PAPGPQPGSG
0501: IPPNQPRNQA PVLDAPFANH LGNGYSASSN LPEAAADEEK VDEKQNAYMD SREKLDYYRT KMQDIVLYKS RCDNRLNEIS ERASADKREA ETLAKKYEEK
0601: YKQVAEIGSK LTIEEARFRE IEGRKMELSQ AIVNMEQGGS ADGLLQVRAD RIQSDLEELM KALTERCKKH GLEVNSKALV DLPAGWQPGI QEGAALWDEE
0701: WDKFEDEGFG NEITFDKSKE QNSSGEKENG TVDDGSGPPD SPTHVEDNYG PFSETSDRHH ESEYGTTHSE DRSPRDSPVS RNATEVPSPD YSQGKNSEFF
0801: DDSNWASAFD TNDDVDSVWG FDASKSQDGD YFGSGDDFGG NTARADSPSS RSFGAQRKSQ FAFDDSVPST PLSRFGNSPP RFSDASARDN NFDSFSRFDS
0901: FNTSEAGAGF SSQPERLSRF DSINSSKDFG GAAFSRFDSI NSSRDVTGAE KFSRFDSINS SKDFGGPSLS RFDSMNSTKD FSGSHGYSFD DADPFGSTGP
1001: FKVSSDESPT KRSDNWNSF
Arabidopsis Description
Calcium-binding EF hand family protein [Source:UniProtKB/TrEMBL;Acc:Q9LM78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.