Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77930 | Canola | cytosol | 98.66 | 99.14 |
| AT3G50590.1 | Thale cress | cytosol | 90.36 | 91.76 |
| Solyc02g090570.2.1 | Tomato | nucleus | 73.52 | 74.38 |
| GSMUA_Achr10P... | Banana | cytosol | 66.69 | 69.31 |
| Os09t0407950-01 | Rice | plasma membrane | 40.15 | 66.26 |
| KXG38043 | Sorghum | cytosol | 66.56 | 65.88 |
| TraesCS7A01G009900.1 | Wheat | cytosol | 64.0 | 65.24 |
| TraesCS7D01G009600.1 | Wheat | golgi | 64.86 | 65.13 |
| TraesCS4A01G485300.1 | Wheat | cytosol | 64.86 | 65.06 |
| Zm00001d033368_P007 | Maize | cytosol | 64.67 | 64.01 |
| HORVU5Hr1G067090.1 | Barley | cytosol | 64.92 | 63.03 |
| Os09t0408000-01 | Rice | cytosol, nucleus | 18.06 | 60.91 |
| VIT_00s0961g00020.t01 | Wine grape | cytosol, extracellular, plastid | 7.99 | 53.69 |
| VIT_00s0783g00010.t01 | Wine grape | cytosol | 16.72 | 48.32 |
| CDY26515 | Canola | cytosol, nucleus, plastid | 7.2 | 46.64 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:22.1.4.4 | UniProt:A0A078FXM8 | EnsemblPlants:CDY17791 | ProteinID:CDY17791 | ProteinID:CDY17791.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00002052001 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19878 | PANTHER:PTHR19878:SF4 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EF020B | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
BnaC08g21990DBnaC08g21990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXM8]
Coordinates
chrLK032077:+:642768..650741
Molecular Weight (calculated)
178629.0 Da
IEP (calculated)
8.036
GRAVY (calculated)
-0.167
Length
1639 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEWATVQHLD LRHVGRGISK PLQPHTAAFH PTQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVKMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TIEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASAFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPRILSQQGG EAVYPLPRIK TLEVHTKLNL AALIFANMAG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEQHH
0401: KGQNQLTISD IARKAFLYSH FMEGHAKTAP ISRLPLITVM DTKDQLKDIP VCQPFHLELN FFNKPNRVLH YPVRAFYIEG LNLMAHNLCS GTDSIYKKLY
0501: TSIPGNVEYH SKQIVYSRKR NLFLVVYEFS GATNEVVLYW ENTGSQLPNS KGSTAKGCDA AFIGPNDDQF VILDEDKTGL SMYILPKLTT IEENEKNLLS
0601: EENQTKEENP SAIQGPQQFL FETEVDRVFS TPIESTLMFA CNGTQLGLAK LFQGYRLSAT DGHYISTQGE GRKSIRLKKH EIALQKKLTS QISAVVFLHY
0701: PFIWSASSQF SLEMELTRDV QWQETPRGYV AGVLTTQRVL MVSADFDILA STLTSANFRS LLWVGPALLF STTTAVCLLG WDGKVRTILS ISTPYAALVG
0801: ALNDRLLLAN PTDISPKQKK GIEIKSCLVG LLEPLLIGFS TMQQTFQQKL DLSEILYQIT TRFDSLRITP RSLDILASSP PVCGDLAVSL AQAGPQFNQV
0901: LRCTYAIKAL RFSTALSVLK DEFLRSRDYP KCPPTSLLFQ RFRQLGYACI KYGQFDYAKE TFEVIGDNES LLDLFICHLN PSAMRRLAQK LEEESGDPEL
1001: RRYCERILRA RSTGWTQGIF ANFAAESMVP KGPEWGGGNW DIKTPTDMKS IPQWELAGEV MPYMKSDDGT IPSIVADHIG VYLGCVKGRV NVVEIKEDSL
1101: VSKPGGLLSS LGKPLSDKPL ALPAGESSSL MGLESLGKQN VADEQAKAAE EFKKTMYGAA GDGSSSDEEG VPKTKKLQIR IREKPTSTTV DVNKLKEATR
1201: TFKLGDGLGL PMSRTKSTSA GSQDLGEMLS QPSPSTTAPV SASAPVDPFA MSSWTQPPQP MSQPAPSGST GMVAGPIPED FFQNTIPSVE VAKTLLPAGT
1301: YLSKMDQIAQ AAKNAPNQAN NPTQPDIGLP GGGVPPTTQQ PGVPYQTVGL PDGGVPPQFP GQTQGTPQLP GQTQGAPQVP VYSQPLDLSV LGVPNTDSGK
1401: PPGQPTSPPA SVRPGQVPRG AAAPLCFKTG LAHLEQNQLP DALSCFDEAF LALAKDQSRG ADIKAQATIC AQYKIAVTLL REILRLQRVQ GASALSAKDE
1501: MARLSRHLAS LPLLAKHRIN CIRTAIKRNM EVQNYGYSKQ MLELLLSKAP ASKQEELRGL VDLCVQRGTS NKSIDPLEDP SQLCSATLSR LSTIGYDVCD
1601: LCGAKFAALS SPGCIICGMG SIKRSDALAG PAPVSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TIEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASAFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPRILSQQGG EAVYPLPRIK TLEVHTKLNL AALIFANMAG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEQHH
0401: KGQNQLTISD IARKAFLYSH FMEGHAKTAP ISRLPLITVM DTKDQLKDIP VCQPFHLELN FFNKPNRVLH YPVRAFYIEG LNLMAHNLCS GTDSIYKKLY
0501: TSIPGNVEYH SKQIVYSRKR NLFLVVYEFS GATNEVVLYW ENTGSQLPNS KGSTAKGCDA AFIGPNDDQF VILDEDKTGL SMYILPKLTT IEENEKNLLS
0601: EENQTKEENP SAIQGPQQFL FETEVDRVFS TPIESTLMFA CNGTQLGLAK LFQGYRLSAT DGHYISTQGE GRKSIRLKKH EIALQKKLTS QISAVVFLHY
0701: PFIWSASSQF SLEMELTRDV QWQETPRGYV AGVLTTQRVL MVSADFDILA STLTSANFRS LLWVGPALLF STTTAVCLLG WDGKVRTILS ISTPYAALVG
0801: ALNDRLLLAN PTDISPKQKK GIEIKSCLVG LLEPLLIGFS TMQQTFQQKL DLSEILYQIT TRFDSLRITP RSLDILASSP PVCGDLAVSL AQAGPQFNQV
0901: LRCTYAIKAL RFSTALSVLK DEFLRSRDYP KCPPTSLLFQ RFRQLGYACI KYGQFDYAKE TFEVIGDNES LLDLFICHLN PSAMRRLAQK LEEESGDPEL
1001: RRYCERILRA RSTGWTQGIF ANFAAESMVP KGPEWGGGNW DIKTPTDMKS IPQWELAGEV MPYMKSDDGT IPSIVADHIG VYLGCVKGRV NVVEIKEDSL
1101: VSKPGGLLSS LGKPLSDKPL ALPAGESSSL MGLESLGKQN VADEQAKAAE EFKKTMYGAA GDGSSSDEEG VPKTKKLQIR IREKPTSTTV DVNKLKEATR
1201: TFKLGDGLGL PMSRTKSTSA GSQDLGEMLS QPSPSTTAPV SASAPVDPFA MSSWTQPPQP MSQPAPSGST GMVAGPIPED FFQNTIPSVE VAKTLLPAGT
1301: YLSKMDQIAQ AAKNAPNQAN NPTQPDIGLP GGGVPPTTQQ PGVPYQTVGL PDGGVPPQFP GQTQGTPQLP GQTQGAPQVP VYSQPLDLSV LGVPNTDSGK
1401: PPGQPTSPPA SVRPGQVPRG AAAPLCFKTG LAHLEQNQLP DALSCFDEAF LALAKDQSRG ADIKAQATIC AQYKIAVTLL REILRLQRVQ GASALSAKDE
1501: MARLSRHLAS LPLLAKHRIN CIRTAIKRNM EVQNYGYSKQ MLELLLSKAP ASKQEELRGL VDLCVQRGTS NKSIDPLEDP SQLCSATLSR LSTIGYDVCD
1601: LCGAKFAALS SPGCIICGMG SIKRSDALAG PAPVSTPFG
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI
0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID
0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG
0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS
0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE
0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQVQWQETP RGYVAGILTT
0701: QRVLMVSADF DILASSSTKY DRGLPSFRSL LWVGPALLFS TTTAVCLLGW DGKVRTILSI STPYAALVGA LNDRLLLAHP TDISPKQKKG IEIKSCLVGL
0801: LEPLLIGFST MQQTFEQKVD LSEILYQITT RFDSLRITPR SLDILARSAP VCGDLAVSLA QAGPQFNQVL RCAYAIKALR FSTALSVLKD EFLRSRDYPK
0901: CPPTSLLFQR FRQLGYACIK YGQFDSAKET FEVIGDYESM LDLFICHLNP SAMRRLAQKL EEESGDPELR RYCERILRVR STGWTQGIFA NFAAESMVPK
1001: GPEWGGGNWE IKTPTDMKSI PKWELAGEVM PYMKNEDGTI PSIVADHIGV YLGCVKGRVN VVEIKEDSLV SKPGGLSLLG KPVSDKPLAL PAGESSSMMG
1101: LESLGKQNVA DEQAKAAEEF KKTMYGATGD GSSSDEEGVT KPKKLQIRIR EKPTSTTVDV NKLKEAAKTF KLGDGLGLTM SRTKSINAGS QDLGQMLSQP
1201: SSSTVATTTA PSSASAPVDP FAMSSWTQQP QPVSQPAPPG VAAPIPEDFF QNTIPSVEVA KTLPPPGTYL SKMDQAARAA IAAQGGPNQA NNTPLPDIGL
1301: PDGGVPQQYP QQTSQQPGAP FQTVGLPDGG VRQQYPGQNQ VPSQVPVSTQ PLDLSVLGVP NTGDSGKPPG QPQSPPASVR PGQVPRGAAA PVCFKTGLAH
1401: LEQNQLPDAL SCFDEAFLAL AKDQSRGADI KAQATICAQY KIAVTLLREI LRLQRVQGAS ALSAKDEMAR LSRHLASLPL LAKHRINCIR TAIKRNMEVQ
1501: NYGYSKQMLE LLLSKAPASK QEELRGLVDL CVQRGTSNKS IDPLEDPSQL CSATLSRLST IGYDVCDLCG AKFAALSSPG CIICGMGSIK RSDALAGPAP
1601: VSTPFG
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0P2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.