Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026769.1-P | Field mustard | extracellular | 89.63 | 100.0 |
| CDY36552 | Canola | extracellular | 89.63 | 100.0 |
| CDY55980 | Canola | extracellular | 89.63 | 100.0 |
| CDY71251 | Canola | extracellular | 89.63 | 100.0 |
| AT1G15370.1 | Thale cress | extracellular | 85.37 | 95.24 |
| KRH44443 | Soybean | cytosol | 76.83 | 85.71 |
| Solyc06g068080.2.1 | Tomato | cytosol | 76.22 | 85.03 |
| PGSC0003DMT400073364 | Potato | cytosol | 76.22 | 85.03 |
| Solyc03g116600.2.1 | Tomato | cytosol | 75.61 | 84.35 |
| VIT_09s0002g06730.t01 | Wine grape | cytosol, extracellular, plastid | 75.0 | 83.67 |
| PGSC0003DMT400001702 | Potato | cytosol | 74.39 | 82.99 |
| EER90485 | Sorghum | cytosol | 72.56 | 80.95 |
| TraesCS5B01G559500.1 | Wheat | cytosol | 72.56 | 80.95 |
| Zm00001d034893_P001 | Maize | mitochondrion | 71.95 | 80.27 |
| TraesCS5D01G565700.1 | Wheat | cytosol | 71.95 | 80.27 |
| TraesCS4A01G319600.1 | Wheat | cytosol | 71.95 | 80.27 |
| GSMUA_Achr8P14590_001 | Banana | cytosol | 69.51 | 77.55 |
| KRH09738 | Soybean | cytosol | 68.29 | 76.19 |
| GSMUA_Achr4P05640_001 | Banana | cytosol | 68.29 | 76.19 |
| KRH47463 | Soybean | extracellular | 68.9 | 75.84 |
| HORVU7Hr1G058240.1 | Barley | cytosol | 30.49 | 66.67 |
| HORVU6Hr1G069160.1 | Barley | extracellular | 35.37 | 66.67 |
| HORVU3Hr1G098440.1 | Barley | cytosol | 30.49 | 66.67 |
| HORVU2Hr1G112780.2 | Barley | extracellular | 34.76 | 65.52 |
| HORVU7Hr1G068500.1 | Barley | cytosol | 29.27 | 64.0 |
| HORVU3Hr1G030140.1 | Barley | extracellular | 33.54 | 63.22 |
| HORVU3Hr1G032710.2 | Barley | extracellular | 35.37 | 59.18 |
Protein Annotations
| EnsemblPlants:CDY39638 | EnsemblPlantsGene:GSBRNA2T00068207001 | Gene3D:3.30.450.60 | GO:A0A078HSB5 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016192 | InterPro:Longin-like_dom_sf | PANTHER:PTHR11043 | PANTHER:PTHR11043:SF1 | ProteinID:CDY39638 | ProteinID:CDY39638.1 |
| SUPFAM:SSF64356 | UniParc:UPI0004EC0AA6 | UniProt:A0A078HSB5 | MapMan:22.1.4.3 | : | : |
Description
BnaC05g11670DBnaC05g11670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSB5]
Coordinates
chrLK032453:+:200368..201778
Molecular Weight (calculated)
18634.7 Da
IEP (calculated)
4.716
GRAVY (calculated)
-0.001
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKEHREEYE GIAEEESMIL AVLFANSVGN VLIERFNGVP AEERLTWRSF LVKLGAENLK GVKNEELLVA CHKSVYIVYT MLGDVSIFLV GKDEYDELAL
101: AEAIFIITGA VKDICGKPPT ERVFLDKYGR ICLCLDEIVW NGLLENTDKD RIKRLIRLKP PSEF
101: AEAIFIITGA VKDICGKPPT ERVFLDKYGR ICLCLDEIVW NGLLENTDKD RIKRLIRLKP PSEF
001: MILAVLFANS VGNVLIERFN GVPAEERLHW RSFLVKLGAD NLKGVKNEEL LVACHKSVYI VYTMLGDVSI FLVGKDEYDE LALAETIYII TAAVKDVCGK
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
101: PPTERVFLDK YGRICLCLDE IVWNGLLENT DKDRIKRLIR LKPPSEV
Arabidopsis Description
F9L1.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI32]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.