Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015717.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX88319 | Canola | cytosol | 100.0 | 100.0 |
| CDX68083 | Canola | cytosol | 97.94 | 97.94 |
| CDX85975 | Canola | cytosol | 97.94 | 97.94 |
| CDY45952 | Canola | cytosol | 95.88 | 95.88 |
| CDY13566 | Canola | cytosol | 95.88 | 95.88 |
| AT1G76860.1 | Thale cress | cytosol | 92.78 | 91.84 |
| CDY29472 | Canola | cytosol | 91.75 | 91.75 |
| CDY04605 | Canola | cytosol | 75.26 | 87.95 |
| KRH70311 | Soybean | cytosol | 86.6 | 86.6 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 85.57 | 85.57 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 85.57 | 85.57 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 85.57 | 85.57 |
| Solyc11g005370.1.1 | Tomato | nucleus | 85.57 | 85.57 |
| PGSC0003DMT400010183 | Potato | cytosol | 85.57 | 85.57 |
| EES03941 | Sorghum | cytosol | 85.57 | 84.69 |
| GSMUA_Achr5P26110_001 | Banana | cytosol | 84.54 | 84.54 |
| KRH08702 | Soybean | cytosol | 84.54 | 84.54 |
| GSMUA_Achr3P22490_001 | Banana | cytosol | 82.47 | 82.47 |
| Os01t0866700-01 | Rice | cytosol | 84.54 | 78.85 |
| VIT_18s0072g00710.t01 | Wine grape | nucleus | 70.1 | 64.15 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 83.51 | 60.9 |
| Zm00001d042725_P001 | Maize | cytosol | 69.07 | 50.38 |
Protein Annotations
| EnsemblPlants:CDX87565 | EnsemblPlantsGene:GSBRNA2T00146566001 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm3 | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF6 | PFAM:PF01423 | ProteinID:CDX87565 | ProteinID:CDX87565.1 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI0002541A27 | MapMan:16.4.3.3 | : | : |
Description
BnaA07g33080D
Coordinates
chrLK031850:+:1250887..1251963
Molecular Weight (calculated)
11269.5 Da
IEP (calculated)
4.504
GRAVY (calculated)
-0.299
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGEEDATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTVE IDDETYEEIV RTIKRNIQYL FVRGDGVILV SPPLRTT
1: MSVEEDATVR EPLDLIRLSI EERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTIE IDDETYEEIV RTTKRTVPFL FVRGDGVILV SPPLRTT
Arabidopsis Description
LSM3ASm-like protein LSM3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LMN4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.