Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33390 | Soybean | cytosol | 40.6 | 80.6 |
| EES03941 | Sorghum | cytosol | 57.14 | 77.55 |
| Os01t0866700-01 | Rice | cytosol | 55.64 | 71.15 |
| PGSC0003DMT400010183 | Potato | cytosol | 51.88 | 71.13 |
| Solyc11g005370.1.1 | Tomato | nucleus | 51.88 | 71.13 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 51.13 | 70.1 |
| GSMUA_Achr5P26110_001 | Banana | cytosol | 51.13 | 70.1 |
| GSMUA_Achr3P22490_001 | Banana | cytosol | 51.13 | 70.1 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 51.13 | 70.1 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 51.13 | 70.1 |
| CDY13566 | Canola | cytosol | 50.38 | 69.07 |
| CDY45952 | Canola | cytosol | 50.38 | 69.07 |
| CDX88319 | Canola | cytosol | 50.38 | 69.07 |
| CDX87565 | Canola | cytosol | 50.38 | 69.07 |
| CDX85975 | Canola | cytosol | 50.38 | 69.07 |
| CDX68083 | Canola | cytosol | 50.38 | 69.07 |
| AT1G76860.1 | Thale cress | cytosol | 49.62 | 67.35 |
| Bra025880.1-P | Field mustard | cytosol | 46.62 | 66.67 |
| VIT_18s0072g00710.t01 | Wine grape | nucleus | 52.63 | 66.04 |
| CDY29472 | Canola | cytosol | 48.12 | 65.98 |
| AT1G21190.1 | Thale cress | cytosol | 47.37 | 64.95 |
| CDY04605 | Canola | cytosol | 36.84 | 59.04 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 54.89 | 54.89 |
Protein Annotations
| EnsemblPlants:Zm00001d042725_P001 | EnsemblPlants:Zm00001d042725_T001 | EnsemblPlantsGene:Zm00001d042725 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | InterPro:LSM_dom_sf |
| InterPro:Lsm3 | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF2 | ProteinID:ONM36186.1 | SEG:seg | SUPFAM:SSF50182 |
| UniParc:UPI0008435CBB | UniProt:A0A1D6N6G2 | MapMan:16.4.3.3 | : | : | : |
Description
Sm-like protein LSM3B
Coordinates
chr3:+:178246316..178249292
Molecular Weight (calculated)
15454.6 Da
IEP (calculated)
4.621
GRAVY (calculated)
-0.094
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAEEEIAV KEPLDLIRLS LDERIYVKLR SDRELRGKLH VARSSLFHIP QTSLMWKEAS IIESAPLAAY DQHLNMILGD VEEVVTTVEI DDETYEEIVR
101: DNLCRPRNAL SPFFLSEVMV SYWFLHPFVR HEV
101: DNLCRPRNAL SPFFLSEVMV SYWFLHPFVR HEV
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Arabidopsis Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.