Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g005370.1.1 | Tomato | nucleus | 100.0 | 100.0 |
| GSMUA_Achr5P26110_001 | Banana | cytosol | 93.81 | 93.81 |
| GSMUA_Achr3P22490_001 | Banana | cytosol | 91.75 | 91.75 |
| EES03941 | Sorghum | cytosol | 90.72 | 89.8 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 88.66 | 88.66 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 88.66 | 88.66 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 88.66 | 88.66 |
| AT1G76860.1 | Thale cress | cytosol | 88.66 | 87.76 |
| CDX85975 | Canola | cytosol | 87.63 | 87.63 |
| CDX68083 | Canola | cytosol | 87.63 | 87.63 |
| Os01t0866700-01 | Rice | cytosol | 91.75 | 85.58 |
| CDY13566 | Canola | cytosol | 85.57 | 85.57 |
| CDY45952 | Canola | cytosol | 85.57 | 85.57 |
| CDX88319 | Canola | cytosol | 85.57 | 85.57 |
| CDX87565 | Canola | cytosol | 85.57 | 85.57 |
| AT1G21190.1 | Thale cress | cytosol | 85.57 | 85.57 |
| CDY29472 | Canola | cytosol | 84.54 | 84.54 |
| KRH33390 | Soybean | cytosol | 57.73 | 83.58 |
| CDY04605 | Canola | cytosol | 67.01 | 78.31 |
| Bra025880.1-P | Field mustard | cytosol | 67.01 | 69.89 |
| VIT_18s0072g00710.t01 | Wine grape | nucleus | 76.29 | 69.81 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 91.75 | 66.92 |
| Zm00001d042725_P001 | Maize | cytosol | 71.13 | 51.88 |
Protein Annotations
| EntrezGene:102597966 | MapMan:16.4.3.3 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm3 | UniProt:M0ZXM4 |
| PFAM:PF01423 | EnsemblPlantsGene:PGSC0003DMG400003988 | PGSC:PGSC0003DMG400003988 | EnsemblPlants:PGSC0003DMT400010183 | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF6 |
| SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI00027697AF | RefSeq:XP_006351021.1 | : | : |
Description
Snrnp sm protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003988]
Coordinates
chr11:+:7639000..7644099
Molecular Weight (calculated)
11213.5 Da
IEP (calculated)
4.513
GRAVY (calculated)
-0.305
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MGSEEESTVK EPLDLIRLSL DERIYVKLRS DRELRGKLHA YDQHLNMILG DVEEIVTTVE IDDETYEEIV RATRRTIPFL FVRGDGVILV SPPLRTT
1: MSVEEDATVR EPLDLIRLSI EERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTIE IDDETYEEIV RTTKRTVPFL FVRGDGVILV SPPLRTT
Arabidopsis Description
LSM3ASm-like protein LSM3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LMN4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.