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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra003705.1-P Field mustard cytosol 93.88 94.85
CDX68083 Canola cytosol 93.88 94.85
CDX85975 Canola cytosol 93.88 94.85
Bra008283.1-P Field mustard cytosol 92.86 93.81
CDY13566 Canola cytosol 92.86 93.81
CDY45952 Canola cytosol 92.86 93.81
Bra015717.1-P Field mustard cytosol 91.84 92.78
CDX87565 Canola cytosol 91.84 92.78
CDX88319 Canola cytosol 91.84 92.78
KRH70311 Soybean cytosol 90.82 91.75
AT1G21190.1 Thale cress cytosol 89.8 90.72
GSMUA_Achr5P26110_001 Banana cytosol 88.78 89.69
KRH08702 Soybean cytosol 88.78 89.69
EES03941 Sorghum cytosol 88.78 88.78
PGSC0003DMT400010183 Potato cytosol 87.76 88.66
Solyc11g005370.1.1 Tomato nucleus 87.76 88.66
GSMUA_Achr3P22490_001 Banana cytosol 86.73 87.63
TraesCS1A01G273400.1 Wheat cytosol 83.67 84.54
TraesCS1B01G283200.1 Wheat cytosol 83.67 84.54
TraesCS1D01G273400.1 Wheat cytosol 83.67 84.54
Os01t0866700-01 Rice cytosol 88.78 83.65
VIT_18s0072g00710.t01 Wine grape nucleus 71.43 66.04
HORVU3Hr1G083300.1 Barley mitochondrion 87.76 64.66
Zm00001d042725_P001 Maize cytosol 67.35 49.62
Protein Annotations
MapMan:16.4.3.3Gene3D:2.30.30.100EntrezGene:844021UniProt:A0A178WQ75ProteinID:AAG51149.1ProteinID:AEE35896.1
ArrayExpress:AT1G76860EnsemblPlantsGene:AT1G76860RefSeq:AT1G76860TAIR:AT1G76860RefSeq:AT1G76860-TAIR-GEnsemblPlants:AT1G76860.1
TAIR:AT1G76860.1EMBL:AY086266EMBL:BT025575GO:GO:0000398GO:GO:0000932GO:GO:0000956
GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005681GO:GO:0005688GO:GO:0005737GO:GO:0006139
GO:GO:0006397GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009056GO:GO:0009987
GO:GO:0016043GO:GO:0030529GO:GO:0033962GO:GO:0046540GO:GO:0071011GO:GO:0071013
GO:GO:1990726InterPro:LSM_dom_euk/arcInterPro:LSM_dom_sfInterPro:Lsm3RefSeq:NP_177812.1ProteinID:OAP19292.1
PFAM:PF01423PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PANTHER:PTHR13110PANTHER:PTHR13110:SF6UniProt:Q9C6K5SMART:SM00651SUPFAM:SSF50182
UniParc:UPI00000A190ASEG:seg::::
Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
Coordinates
chr1:-:28854414..28855750
Molecular Weight (calculated)
11286.5 Da
IEP (calculated)
4.438
GRAVY (calculated)
-0.285
Length
98 amino acids
Sequence
(BLAST)
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.