Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES03941 | Sorghum | cytosol | 70.68 | 95.92 |
| Os01t0866700-01 | Rice | cytosol | 72.93 | 93.27 |
| KRH70311 | Soybean | cytosol | 67.67 | 92.78 |
| KRH08702 | Soybean | cytosol | 67.67 | 92.78 |
| Solyc11g005370.1.1 | Tomato | nucleus | 66.92 | 91.75 |
| PGSC0003DMT400010183 | Potato | cytosol | 66.92 | 91.75 |
| GSMUA_Achr5P26110_001 | Banana | cytosol | 66.17 | 90.72 |
| GSMUA_Achr3P22490_001 | Banana | cytosol | 66.17 | 90.72 |
| AT1G76860.1 | Thale cress | cytosol | 64.66 | 87.76 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 63.91 | 87.63 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 63.91 | 87.63 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 63.91 | 87.63 |
| CDX85975 | Canola | cytosol | 62.41 | 85.57 |
| CDX68083 | Canola | cytosol | 62.41 | 85.57 |
| Bra003705.1-P | Field mustard | cytosol | 62.41 | 85.57 |
| CDY13566 | Canola | cytosol | 61.65 | 84.54 |
| CDY45952 | Canola | cytosol | 61.65 | 84.54 |
| Bra008283.1-P | Field mustard | cytosol | 61.65 | 84.54 |
| Bra015717.1-P | Field mustard | cytosol | 60.9 | 83.51 |
| AT1G21190.1 | Thale cress | cytosol | 60.9 | 83.51 |
| CDX87565 | Canola | cytosol | 60.9 | 83.51 |
| CDX88319 | Canola | cytosol | 60.9 | 83.51 |
| CDY29472 | Canola | cytosol | 60.15 | 82.47 |
| CDY04605 | Canola | cytosol | 47.37 | 75.9 |
| VIT_18s0072g00710.t01 | Wine grape | nucleus | 53.38 | 66.98 |
| Zm00001d042725_P001 | Maize | cytosol | 54.89 | 54.89 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G083300.1 | EnsemblPlantsGene:HORVU3Hr1G083300 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm3 | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF6 | PFAM:PF01423 | SEG:seg | SMART:SM00651 |
| SUPFAM:SSF50182 | UniParc:UPI000B468D08 | UniProt:A0A287LZU9 | MapMan:16.4.3.3 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:602773272..602776454
Molecular Weight (calculated)
14912.1 Da
IEP (calculated)
6.547
GRAVY (calculated)
-0.194
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: PKTPVPTLTA AWRVRLGGRK LGFSSRLRGA AGAEAMASAD EEIAVKEPLD LIRLSLDERI YVKLRSDREL RGKLHAYDQH LNMILGDVEE IVTTVEIDDE
101: TYEEIVRTTR RTIPFLFVRG DGVILVSPPL RTA
101: TYEEIVRTTR RTIPFLFVRG DGVILVSPPL RTA
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Arabidopsis Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.