Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29472 | Canola | cytosol | 95.18 | 81.44 |
| AT1G21190.1 | Thale cress | cytosol | 92.77 | 79.38 |
| CDX68083 | Canola | cytosol | 89.16 | 76.29 |
| CDX85975 | Canola | cytosol | 89.16 | 76.29 |
| CDX87565 | Canola | cytosol | 87.95 | 75.26 |
| CDX88319 | Canola | cytosol | 87.95 | 75.26 |
| CDY13566 | Canola | cytosol | 86.75 | 74.23 |
| CDY45952 | Canola | cytosol | 86.75 | 74.23 |
| KRH70311 | Soybean | cytosol | 81.93 | 70.1 |
| GSMUA_Achr5P26110_001 | Banana | cytosol | 79.52 | 68.04 |
| KRH08702 | Soybean | cytosol | 79.52 | 68.04 |
| GSMUA_Achr3P22490_001 | Banana | cytosol | 78.31 | 67.01 |
| PGSC0003DMT400010183 | Potato | cytosol | 78.31 | 67.01 |
| Solyc11g005370.1.1 | Tomato | nucleus | 78.31 | 67.01 |
| EES03941 | Sorghum | cytosol | 78.31 | 66.33 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 75.9 | 64.95 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 75.9 | 64.95 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 75.9 | 64.95 |
| Os01t0866700-01 | Rice | cytosol | 77.11 | 61.54 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 75.9 | 47.37 |
| VIT_18s0072g00710.t01 | Wine grape | nucleus | 59.04 | 46.23 |
| Zm00001d042725_P001 | Maize | cytosol | 59.04 | 36.84 |
Protein Annotations
| EnsemblPlants:CDY04605 | EnsemblPlantsGene:GSBRNA2T00119161001 | Gene3D:2.30.30.100 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | PANTHER:PTHR13110 |
| PANTHER:PTHR13110:SF6 | PFAM:PF01423 | ProteinID:CDY04605 | ProteinID:CDY04605.1 | SMART:SM00651 | SUPFAM:SSF50182 |
| UniParc:UPI0004EE2DFD | MapMan:16.4.3.3 | : | : | : | : |
Description
BnaC05g16430D
Coordinates
chrLK031956:-:227221..228159
Molecular Weight (calculated)
9555.6 Da
IEP (calculated)
4.207
GRAVY (calculated)
0.014
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MSVEEDATVR EPLDLIRLSI EERINAFDQH LNMILGDVEE VITTVEIDNE TYEEIVRTLK RKVLFLFVRG DGVILVSPPL RTT
1: MSVEEDATVR EPLDLIRLSI EERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTIE IDDETYEEIV RTTKRTVPFL FVRGDGVILV SPPLRTT
Arabidopsis Description
LSM3ASm-like protein LSM3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LMN4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.