Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P26110_001 | Banana | cytosol | 96.91 | 96.91 |
| Solyc11g005370.1.1 | Tomato | nucleus | 91.75 | 91.75 |
| PGSC0003DMT400010183 | Potato | cytosol | 91.75 | 91.75 |
| EES03941 | Sorghum | cytosol | 90.72 | 89.8 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 88.66 | 88.66 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 88.66 | 88.66 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 88.66 | 88.66 |
| AT1G76860.1 | Thale cress | cytosol | 87.63 | 86.73 |
| Os01t0866700-01 | Rice | cytosol | 91.75 | 85.58 |
| CDX85975 | Canola | cytosol | 84.54 | 84.54 |
| CDX68083 | Canola | cytosol | 84.54 | 84.54 |
| AT1G21190.1 | Thale cress | cytosol | 84.54 | 84.54 |
| CDY13566 | Canola | cytosol | 83.51 | 83.51 |
| CDY29472 | Canola | cytosol | 83.51 | 83.51 |
| CDY45952 | Canola | cytosol | 83.51 | 83.51 |
| CDX88319 | Canola | cytosol | 82.47 | 82.47 |
| CDX87565 | Canola | cytosol | 82.47 | 82.47 |
| KRH33390 | Soybean | cytosol | 56.7 | 82.09 |
| CDY04605 | Canola | cytosol | 67.01 | 78.31 |
| VIT_18s0072g00710.t01 | Wine grape | nucleus | 74.23 | 67.92 |
| Bra025880.1-P | Field mustard | cytosol | 64.95 | 67.74 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 90.72 | 66.17 |
| Zm00001d042725_P001 | Maize | cytosol | 70.1 | 51.13 |
Protein Annotations
| MapMan:16.4.3.3 | Gene3D:2.30.30.100 | GO:GO:0000398 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr3G22490_001 | EnsemblPlants:GSMUA_Achr3P22490_001 | EnsemblPlants:GSMUA_Achr3T22490_001 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm3 | UniProt:M0SGW5 | PFAM:PF01423 | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF6 | SMART:SM00651 |
| SUPFAM:SSF50182 | UniParc:UPI0002953F40 | : | : | : | : |
Description
U6 snRNA-associated Sm-like protein LSm3 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22490_001]
Coordinates
chr3:+:23464235..23468166
Molecular Weight (calculated)
11244.5 Da
IEP (calculated)
4.513
GRAVY (calculated)
-0.296
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MASEEESAVK EPLDLIRLSL DERIYVKFRS DRELRGKLHA YDQHLNMILG DVEEIITNVE IDDETYEEIV RTTRRTVPFL FVRGDGVILV SPPLRTA
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Arabidopsis Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.