Factsheet for Solyc11g005370.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010183	Potato	cytosol	100.0	100.0
GSMUA_Achr5P26110_001	Banana	cytosol	93.81	93.81
GSMUA_Achr3P22490_001	Banana	cytosol	91.75	91.75
EES03941	Sorghum	cytosol	90.72	89.8
TraesCS1D01G273400.1	Wheat	cytosol	88.66	88.66
TraesCS1B01G283200.1	Wheat	cytosol	88.66	88.66
TraesCS1A01G273400.1	Wheat	cytosol	88.66	88.66
AT1G76860.1	Thale cress	cytosol	88.66	87.76
CDX85975	Canola	cytosol	87.63	87.63
CDX68083	Canola	cytosol	87.63	87.63
Os01t0866700-01	Rice	cytosol	91.75	85.58
CDY13566	Canola	cytosol	85.57	85.57
CDY45952	Canola	cytosol	85.57	85.57
CDX88319	Canola	cytosol	85.57	85.57
CDX87565	Canola	cytosol	85.57	85.57
AT1G21190.1	Thale cress	cytosol	85.57	85.57
CDY29472	Canola	cytosol	84.54	84.54
KRH33390	Soybean	cytosol	57.73	83.58
CDY04605	Canola	cytosol	67.01	78.31
Bra025880.1-P	Field mustard	cytosol	67.01	69.89
VIT_18s0072g00710.t01	Wine grape	nucleus	76.29	69.81
HORVU3Hr1G083300.1	Barley	mitochondrion	91.75	66.92
Zm00001d042725_P001	Maize	cytosol	71.13	51.88

Protein Annotations

MapMan:16.4.3.3	Gene3D:2.30.30.100	GO:GO:0000398	GO:GO:0000932	GO:GO:0000956	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005688	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0030529	GO:GO:0033962	GO:GO:0046540
GO:GO:0071011	GO:GO:0071013	GO:GO:1990726	UniProt:K4D4F0	InterPro:LSM_dom_euk/arc	InterPro:LSM_dom_sf
InterPro:Lsm3	PFAM:PF01423	PANTHER:PTHR13110	PANTHER:PTHR13110:SF6	SMART:SM00651	SUPFAM:SSF50182
EnsemblPlantsGene:Solyc11g005370.1	EnsemblPlants:Solyc11g005370.1.1	UniParc:UPI00027697AF	:	:	:

Description

No Description!

Coordinates

chr11:-:296498..299974

Molecular Weight (calculated)

11213.5 Da

IEP (calculated)

4.513

GRAVY (calculated)

-0.305

Length

97 amino acids

Sequence
(BLAST)

1: MGSEEESTVK EPLDLIRLSL DERIYVKLRS DRELRGKLHA YDQHLNMILG DVEEIVTTVE IDDETYEEIV RATRRTIPFL FVRGDGVILV SPPLRTT

Best Arabidopsis Sequence Match ( AT1G21190.1 )
(BLAST)

1: MSVEEDATVR EPLDLIRLSI EERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTIE IDDETYEEIV RTTKRTVPFL FVRGDGVILV SPPLRTT

Arabidopsis Description

LSM3ASm-like protein LSM3A [Source:UniProtKB/Swiss-Prot;Acc:Q9LMN4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.