Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33390 | Soybean | cytosol | 54.72 | 86.57 |
| Solyc11g005370.1.1 | Tomato | nucleus | 69.81 | 76.29 |
| PGSC0003DMT400010183 | Potato | cytosol | 69.81 | 76.29 |
| TraesCS1D01G273400.1 | Wheat | cytosol | 68.87 | 75.26 |
| TraesCS1B01G283200.1 | Wheat | cytosol | 68.87 | 75.26 |
| TraesCS1A01G273400.1 | Wheat | cytosol | 68.87 | 75.26 |
| EES03941 | Sorghum | cytosol | 68.87 | 74.49 |
| GSMUA_Achr5P26110_001 | Banana | cytosol | 67.92 | 74.23 |
| GSMUA_Achr3P22490_001 | Banana | cytosol | 67.92 | 74.23 |
| AT1G76860.1 | Thale cress | cytosol | 66.04 | 71.43 |
| Os01t0866700-01 | Rice | cytosol | 69.81 | 71.15 |
| CDY45952 | Canola | cytosol | 64.15 | 70.1 |
| CDY13566 | Canola | cytosol | 64.15 | 70.1 |
| CDX88319 | Canola | cytosol | 64.15 | 70.1 |
| CDX87565 | Canola | cytosol | 64.15 | 70.1 |
| CDX85975 | Canola | cytosol | 64.15 | 70.1 |
| CDX68083 | Canola | cytosol | 64.15 | 70.1 |
| CDY29472 | Canola | cytosol | 61.32 | 67.01 |
| AT1G21190.1 | Thale cress | cytosol | 60.38 | 65.98 |
| Bra025880.1-P | Field mustard | cytosol | 57.55 | 65.59 |
| CDY04605 | Canola | cytosol | 46.23 | 59.04 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 66.98 | 53.38 |
| Zm00001d042725_P001 | Maize | cytosol | 66.04 | 52.63 |
Protein Annotations
| MapMan:16.4.3.3 | Gene3D:2.30.30.100 | ProteinID:CCB44862 | ProteinID:CCB44862.1 | UniProt:F6GY26 | EMBL:FN594968 |
| GO:GO:0000398 | GO:GO:0000932 | GO:GO:0000956 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005688 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030529 | GO:GO:0033962 | GO:GO:0046540 | GO:GO:0071011 | GO:GO:0071013 |
| GO:GO:1990726 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf | InterPro:Lsm3 | PFAM:PF01423 | PANTHER:PTHR13110 |
| PANTHER:PTHR13110:SF2 | SMART:SM00651 | SUPFAM:SSF50182 | UniParc:UPI000210837E | ArrayExpress:VIT_18s0072g00710 | EnsemblPlantsGene:VIT_18s0072g00710 |
| EnsemblPlants:VIT_18s0072g00710.t01 | : | : | : | : | : |
Description
No Description!
Coordinates
chr18:+:19951282..19957415
Molecular Weight (calculated)
12618.8 Da
IEP (calculated)
5.253
GRAVY (calculated)
-0.860
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEEESAVK EPLDLIRLSL DERIYVKLRS DRELRGKLHA YDQHLNMILG DVEEIVTTVE IDDETYEEIV RVKKRSIEKW HQKSDSRHNS QFYSTPANPF
101: FWNPKQ
101: FWNPKQ
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Arabidopsis Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.