Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68083 | Canola | cytosol | 100.0 | 100.0 |
| CDX85975 | Canola | cytosol | 100.0 | 100.0 |
| Bra008283.1-P | Field mustard | cytosol | 97.94 | 97.94 |
| Bra015717.1-P | Field mustard | cytosol | 97.94 | 97.94 |
| AT1G76860.1 | Thale cress | cytosol | 94.85 | 93.88 |
| KRH70311 | Soybean | cytosol | 88.66 | 88.66 |
| EES03941 | Sorghum | cytosol | 87.63 | 86.73 |
| KRH08702 | Soybean | cytosol | 86.6 | 86.6 |
| Os01t0866700-01 | Rice | cytosol | 86.6 | 80.77 |
| Bra025880.1-P | Field mustard | cytosol | 74.23 | 77.42 |
| HORVU3Hr1G083300.1 | Barley | mitochondrion | 85.57 | 62.41 |
Protein Annotations
| MapMan:16.4.3.3 | Gene3D:2.30.30.100 | EnsemblPlantsGene:Bra003705 | EnsemblPlants:Bra003705.1 | EnsemblPlants:Bra003705.1-P | GO:GO:0000398 |
| GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0030529 | InterPro:LSM_dom_euk/arc | InterPro:LSM_dom_sf |
| InterPro:Lsm3 | UniProt:M4CHM2 | PFAM:PF01423 | PANTHER:PTHR13110 | PANTHER:PTHR13110:SF6 | SMART:SM00651 |
| SUPFAM:SSF50182 | UniParc:UPI000254154D | : | : | : | : |
Description
AT1G76860 (E=2e-047) | small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative
Coordinates
chrA07:+:14607718..14608656
Molecular Weight (calculated)
11241.5 Da
IEP (calculated)
4.504
GRAVY (calculated)
-0.310
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MSGEEDATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEEVITTVE IDDETYEEIV RTTKRNIQFL FVRGDGVILV SPPLRTT
1: MSGEEEATVR EPLDLIRLSL DERIYVKLRS DRELRGKLHA FDQHLNMILG DVEETITTVE IDDETYEEIV RTTKRTIEFL FVRGDGVILV SPPLRTAA
Arabidopsis Description
LSM3BLSM3B [Source:UniProtKB/TrEMBL;Acc:A0A178WQ75]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.