CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80774
CDX93320
CDY04839
CDY11202
CDY18400

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	CDX93320	AT2G38230.1	16766694
AT5G60540.1	CDY18400	AT2G38230.1	16766694
AT5G60540.1	CDX80774	AT5G01410.1	16766694
AT5G60540.1	CDY04839	AT5G01410.1	16766694
AT5G60540.1	CDY11202	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80159	Canola	cytosol	83.12	93.66
CDY31539	Canola	cytosol	90.48	82.94
AT5G60540.1	Thale cress	cytosol	87.45	79.22
VIT_06s0004g03000.t01	Wine grape	cytosol	70.13	64.29
KRH75832	Soybean	cytosol	25.54	60.82
KRH65766	Soybean	cytosol	66.67	60.63
KRH75883	Soybean	cytosol	66.23	59.3
Solyc11g069290.1.1	Tomato	plastid	62.77	57.77
PGSC0003DMT400020828	Potato	cytosol	62.77	57.77
Os02t0130100-01	Rice	cytosol	61.9	56.08
KXG29380	Sorghum	cytosol	61.9	56.08
TraesCS6B01G117600.1	Wheat	cytosol	61.47	55.47
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	61.47	55.47
Zm00001d053981_P002	Maize	cytosol	61.9	55.21
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	61.04	55.08
TraesCS6A01G084600.1	Wheat	cytosol	61.04	55.08
GSMUA_Achr7P07370_001	Banana	cytosol	59.31	54.15
TraesCS4D01G289800.1	Wheat	plastid	61.9	50.35
TraesCS4B01G291200.1	Wheat	cytosol	61.47	45.66
HORVU4Hr1G075840.3	Barley	mitochondrion	61.04	39.83
TraesCS4A01G013200.2	Wheat	cytosol	44.59	36.65

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	Gene3D:3.40.50.880	MapMan:7.7.1.2
GO:A0A078F732	UniProt:A0A078F732	EnsemblPlants:CDY09196	ProteinID:CDY09196	ProteinID:CDY09196.1	InterPro:Class_I_gatase-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004359	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	EnsemblPlantsGene:GSBRNA2T00001440001	InterPro:IPR002161
InterPro:IPR029062	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236	PFscan:PS51130	PANTHER:PTHR31559
MetaCyc:PWY-6466	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317	TIGRFAMs:TIGR03800	UniPathway:UPA00245
UniParc:UPI0004EDF296	SEG:seg	:	:	:	:

Description

BnaA02g06220DBnaA02g06220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F732]

Coordinates

chrLK031993:+:692625..693947

Molecular Weight (calculated)

24662.4 Da

IEP (calculated)

4.936

GRAVY (calculated)

-0.044

Length

231 amino acids

Sequence
(BLAST)

001: MGGRGGGEVE LSSLIIPGGE STTMAKLAEY HNLFPALREF VKTGKPVWGT CAGLIFLADR AVGQKEGGQE LVGGLDCTVH RNFFGSQIQS FEADISVPLL
101: TSKEGGAETF RGVFIRAPAV LDVGPDVEVL AHCPVPSNKV LYSSSTVQIQ EEDALPETKV IVAVKQRNLL ATAFHPELTA DTRWHSYFMK MTKEMEQGGS
201: SSSSSSTIVS VGETSVGTEL AKPDIPIYLS N

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.