CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11075
KRH21198

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60540.1	KRH11075	AT2G38230.1	16766694
AT5G60540.1	KRH21198	AT2G38230.1	16766694
AT5G60540.1	KRH11075	AT5G01410.1	16766694
AT5G60540.1	KRH21198	AT5G01410.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65766	Soybean	cytosol	94.19	95.67
KRH75832	Soybean	cytosol	30.62	81.44
VIT_06s0004g03000.t01	Wine grape	cytosol	77.13	78.97
AT5G60540.1	Thale cress	cytosol	71.71	72.55
Bra002473.1-P	Field mustard	cytosol	70.54	72.22
CDY31539	Canola	cytosol	70.54	72.22
Solyc11g069290.1.1	Tomato	plastid	67.05	68.92
PGSC0003DMT400020828	Potato	cytosol	67.05	68.92
Zm00001d053981_P002	Maize	cytosol	68.22	67.95
KXG29380	Sorghum	cytosol	67.05	67.84
Os02t0130100-01	Rice	cytosol	66.67	67.45
CDX80159	Canola	cytosol	53.1	66.83
HORVU6Hr1G015450.1	Barley	cytosol, mitochondrion	65.89	66.41
TraesCS6A01G084600.1	Wheat	cytosol	65.89	66.41
TraesCS6B01G117600.1	Wheat	cytosol	65.89	66.41
CDY09196	Canola	cytosol	59.3	66.23
TraesCSU01G113600.1	Wheat	cytosol, mitochondrion	65.5	66.02
GSMUA_Achr7P07370_001	Banana	cytosol	63.18	64.43
TraesCS4D01G289800.1	Wheat	plastid	67.05	60.92
TraesCS4B01G291200.1	Wheat	cytosol	67.83	56.27
HORVU4Hr1G075840.3	Barley	mitochondrion	66.67	48.59
TraesCS4A01G013200.2	Wheat	cytosol	48.45	44.48

Protein Annotations

KEGG:00220+3.5.1.2	KEGG:00250+3.5.1.2	KEGG:00471+3.5.1.2	KEGG:00750+4.3.3.6	EntrezGene:100786227	Gene3D:3.40.50.880
MapMan:7.7.1.2	UniProt:A0A0R0LGB9	EMBL:ACUP02000516	InterPro:Class_I_gatase-like	EnsemblPlantsGene:GLYMA_01G116100	GO:GO:0003674
GO:GO:0003824	GO:GO:0004359	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0042819	GO:GO:0042823	InterPro:IPR002161	InterPro:IPR029062	EnsemblPlants:KRH75883
ProteinID:KRH75883	ProteinID:KRH75883.1	HAMAP:MF_01615	PFAM:PF01174	PIRSF:PIRSF005639	ScanProsite:PS01236
PFscan:PS51130	PANTHER:PTHR31559	MetaCyc:PWY-6466	InterPro:PdxT/SNO	InterPro:PdxT/SNO_CS	SUPFAM:SSF52317
TIGRFAMs:TIGR03800	UniParc:UPI0006EDC2EB	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:40088443..40093578

Molecular Weight (calculated)

28300.9 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.048

Length

258 amino acids

Sequence
(BLAST)

001: MAVVGVLALQ GSFNEHIAAL RRLGVKGVEI RKPEQLNTIS SLIIPGGEST TMAKLAEYHN LFPALREFVQ MGKPVWGTCA GLIFLANKAM GQKTGGQYLV
101: GGLDCTVHRN FFGSQIQSFE AELSVPELVS KEGGPETFRG IFIRAPAILE AGPEVQVLAD YLVPSSRLLS SDSSIEDKMF WIWQENAEEE SKVIVAVRQG
201: NILATAFHPE LTADTRWHSY FVKMSNEIGE EASSSSLVPA QVSTSQYQQP RNDLPIFQ

Best Arabidopsis Sequence Match ( AT5G60540.1 )
(BLAST)

001: MTVGVLALQG SFNEHIAALR RLGVQGVEIR KADQLLTVSS LIIPGGESTT MAKLAEYHNL FPALREFVKM GKPVWGTCAG LIFLADRAVG QKEGGQELVG
101: GLDCTVHRNF FGSQIQSFEA DILVPQLTSQ EGGPETYRGV FIRAPAVLDV GPDVEVLADY PVPSNKVLYS SSTVQIQEED ALPETKVIVA VKQGNLLATA
201: FHPELTADTR WHSYFIKMTK EIEQGASSSS SKTIVSVGET SAGPEPAKPD LPIFQ

Arabidopsis Description

PDX2PDX2 [Source:UniProtKB/TrEMBL;Acc:A0A178UA48]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.