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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • cytosol 4
  • vacuole 1
  • peroxisome 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, peroxisome, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:peroxisome
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 27224218
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH11075
KRH21198
KRH65766
KRH75832
KRH75883

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38230.1 KRH11075 AT5G01410.1 16766694
AT2G38230.1 KRH21198 AT5G01410.1 16766694
AT2G38230.1 KRH65766 AT5G60540.1 16766694
AT2G38230.1 KRH75832 AT5G60540.1 16766694
AT2G38230.1 KRH75883 AT5G60540.1 16766694
AT5G01410.1 KRH11075 AT2G38230.1 16766694
AT5G01410.1 KRH21198 AT2G38230.1 16766694
AT5G01410.1 KRH11075 AT5G01410.1 16766694
AT5G01410.1 KRH21198 AT5G01410.1 16766694
AT5G01410.1 KRH11075 AT5G01410.1 21798944
AT5G01410.1 KRH21198 AT5G01410.1 21798944
AT5G01410.1 KRH65766 AT5G60540.1 16766694
AT5G01410.1 KRH75832 AT5G60540.1 16766694
AT5G01410.1 KRH75883 AT5G60540.1 16766694
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH21198 Soybean endoplasmic reticulum 99.04 99.04
Solyc06g081980.1.1 Tomato extracellular, nucleus, plastid, unclear 93.25 93.85
PGSC0003DMT400078045 Potato cytosol 92.93 93.53
Bra005687.1-P Field mustard cytosol 92.6 93.2
CDY11202 Canola cytosol 92.6 93.2
CDX80774 Canola cytosol 92.28 92.88
Bra028901.1-P Field mustard cytosol 91.96 92.56
CDY04839 Canola cytosol 91.96 92.56
AT5G01410.1 Thale cress cytosol 91.64 92.23
GSMUA_Achr1P25530_001 Banana cytosol 73.63 89.45
GSMUA_Achr8P31880_001 Banana cytosol 79.42 89.17
GSMUA_AchrUn_... Banana cytosol 72.67 88.28
TraesCS2D01G267800.1 Wheat cytosol 89.07 87.66
TraesCS2B01G287600.1 Wheat cytosol 89.07 87.66
AT2G38230.1 Thale cress cytosol 86.82 87.38
CDX93320 Canola cytosol 80.71 86.85
HORVU2Hr1G065120.1 Barley cytosol 88.1 86.71
Os07t0100200-01 Rice plasma membrane 88.1 86.16
OQU88300 Sorghum cytosol 87.46 85.8
AT2G38210.1 Thale cress cytosol, peroxisome, plastid 21.54 84.81
Os10t0100700-01 Rice plasma membrane 85.21 84.66
VIT_06s0004g06640.t01 Wine grape cytosol 91.64 84.57
Zm00001d018633_P001 Maize cytosol 86.17 84.54
Zm00001d007936_P001 Maize cytosol 86.17 84.54
TraesCS4D01G133600.1 Wheat cytosol 85.21 84.39
HORVU4Hr1G027040.2 Barley cytosol, peroxisome 85.53 84.18
TraesCS4A01G178700.1 Wheat cytosol 84.89 84.08
TraesCS4B01G138900.1 Wheat cytosol 84.89 84.08
CDY18400 Canola cytosol 70.42 82.95
GSMUA_AchrUn_... Banana cytosol 71.7 75.59
TraesCS2A01G268800.1 Wheat plastid 89.07 71.76
Os11t0708500-01 Rice plasma membrane 81.03 69.42
Zm00001d018632_P001 Maize extracellular 86.82 65.38
GSMUA_Achr1P27650_001 Banana cytosol 13.83 51.81
Os10t0191600-00 Rice plasma membrane 29.26 49.19
Protein Annotations
KEGG:00750+4.3.3.6Gene3D:3.20.20.70MapMan:7.7.1.1EMBL:ACUP02009175InterPro:Aldolase_TIMEnsemblPlantsGene:GLYMA_15G087200
GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0042819GO:GO:0042823UniProt:I1MEW6InterPro:IPR001852InterPro:IPR013785EnsemblPlants:KRH11075
ProteinID:KRH11075ProteinID:KRH11075.1HAMAP:MF_01824PFAM:PF01680PIRSF:PIRSF029271ScanProsite:PS01235
PFscan:PS51129PANTHER:PTHR31829MetaCyc:PWY-6466InterPro:PdxS/SNZInterPro:PdxS/SNZ_NInterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366TIGRFAMs:TIGR00343UniParc:UPI00023D2872SEG:seg::
Description
hypothetical protein
Coordinates
chr15:+:6679798..6681723
Molecular Weight (calculated)
33237.3 Da
IEP (calculated)
5.986
GRAVY (calculated)
0.064
Length
311 amino acids
Sequence
(BLAST)
001: MEGSGSGVVT VYGNGAITET KKSPFSVKVG LAQMLRGGVI MDVVDAEQAR IAEEAGACAV MALERVPADI RAQGGVARMS DPQLIKDIKR AVTIPVMAKA
101: RIGHFVEAQI LEAIGIDYVD ESEVLTLADD ANHINKHNFR IPFVCGCRNL GEALRRIREG AAMIRTKGEA GTGNIIEAVR HVRSVMSDIR VLRNMDDDEV
201: FTFAKNIAAP YDLVMQTKQL GRLPVVHFAA GGVATPADAA LMMQLGCDGV FVGSGVFKSG DPAKRARAIV QAVTHYSDPE ILAEVSCGLG EAMVGINLTD
301: DKVERFANRS E
Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)
001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE
Arabidopsis Description
PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.