Factsheet for Zm00001d018632_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007936_P001
Zm00001d018632_P001
Zm00001d018633_P001
Zm00001d053981_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38230.1	Zm00001d007936_P001	AT5G01410.1	16766694
AT2G38230.1	Zm00001d018632_P001	AT5G01410.1	16766694
AT2G38230.1	Zm00001d018633_P001	AT5G01410.1	16766694
AT2G38230.1	Zm00001d053981_P002	AT5G60540.1	16766694
AT5G01410.1	Zm00001d007936_P001	AT2G38230.1	16766694
AT5G01410.1	Zm00001d018632_P001	AT2G38230.1	16766694
AT5G01410.1	Zm00001d018633_P001	AT2G38230.1	16766694
AT5G01410.1	Zm00001d007936_P001	AT5G01410.1	16766694
AT5G01410.1	Zm00001d018632_P001	AT5G01410.1	16766694
AT5G01410.1	Zm00001d018633_P001	AT5G01410.1	16766694
AT5G01410.1	Zm00001d007936_P001	AT5G01410.1	21798944
AT5G01410.1	Zm00001d018632_P001	AT5G01410.1	21798944
AT5G01410.1	Zm00001d018633_P001	AT5G01410.1	21798944
AT5G01410.1	Zm00001d053981_P002	AT5G60540.1	16766694

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018633_P001	Maize	cytosol	75.06	97.79
OQU88300	Sorghum	cytosol	75.06	97.79
Zm00001d007936_P001	Maize	cytosol	74.58	97.16
Os07t0100200-01	Rice	plasma membrane	70.7	91.82
GSMUA_Achr1P25530_001	Banana	cytosol	56.17	90.62
GSMUA_Achr8P31880_001	Banana	cytosol	60.77	90.61
HORVU2Hr1G065120.1	Barley	cytosol	69.01	90.19
Os10t0100700-01	Rice	plasma membrane	68.28	90.1
GSMUA_AchrUn_...	Banana	cytosol	55.69	89.84
TraesCS4A01G178700.1	Wheat	cytosol	68.28	89.81
TraesCS2D01G267800.1	Wheat	cytosol	68.52	89.56
TraesCS2B01G287600.1	Wheat	cytosol	68.52	89.56
TraesCS4D01G133600.1	Wheat	cytosol	68.04	89.49
TraesCS4B01G138900.1	Wheat	cytosol	67.8	89.17
HORVU4Hr1G027040.2	Barley	cytosol, peroxisome	67.55	88.29
KRH11075	Soybean	endoplasmic reticulum, nucleus	65.38	86.82
KRH21198	Soybean	endoplasmic reticulum	65.13	86.5
Bra005687.1-P	Field mustard	cytosol	64.16	85.76
Bra028901.1-P	Field mustard	cytosol	64.16	85.76
CDY11202	Canola	cytosol	64.16	85.76
PGSC0003DMT400078045	Potato	cytosol	64.16	85.76
CDY04839	Canola	cytosol	64.16	85.76
CDX80774	Canola	cytosol	63.92	85.44
Solyc06g081980.1.1	Tomato	extracellular, nucleus, plastid, unclear	63.92	85.44
AT5G01410.1	Thale cress	cytosol	63.68	85.11
CDX93320	Canola	cytosol	58.11	83.05
AT2G38230.1	Thale cress	cytosol	61.74	82.52
VIT_06s0004g06640.t01	Wine grape	cytosol	63.68	78.04
CDY18400	Canola	cytosol	49.64	77.65
AT2G38210.1	Thale cress	cytosol, peroxisome, plastid	14.53	75.95
GSMUA_AchrUn_...	Banana	cytosol	53.75	75.25
Os11t0708500-01	Rice	plasma membrane	65.13	74.1
TraesCS2A01G268800.1	Wheat	plastid	68.77	73.58
GSMUA_Achr1P27650_001	Banana	cytosol	11.14	55.42
Os10t0191600-00	Rice	plasma membrane	23.49	52.43

Protein Annotations

KEGG:00750+4.3.3.6	Gene3D:3.20.20.70	MapMan:7.7.1.1	UniProt:A0A1D6HR41	InterPro:Aldolase_TIM	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0042819
GO:GO:0042823	InterPro:IPR001852	InterPro:IPR013785	HAMAP:MF_01824	ProteinID:ONM50981.1	PFAM:PF01680
ScanProsite:PS01235	PFscan:PS51129	PANTHER:PTHR31829	InterPro:PdxS/SNZ	InterPro:PdxS/SNZ_N	InterPro:RibuloseP-bd_barrel
SUPFAM:SSF51366	TIGRFAMs:TIGR00343	UniParc:UPI0002220D99	EnsemblPlantsGene:Zm00001d018632	EnsemblPlants:Zm00001d018632_P001	EnsemblPlants:Zm00001d018632_T001
SEG:seg	:	:	:	:	:

Description

Pyridoxal 5'-phosphate synthase-like subunit PDX1.2

Coordinates

chr7:+:1388811..1390530

Molecular Weight (calculated)

44021.3 Da

IEP (calculated)

9.902

GRAVY (calculated)

-0.102

Length

413 amino acids

Sequence
(BLAST)

001: MAGGRGTSQA NHSNFSTLGV SVSPLRFGPP PLVMAHHRRR LLHSPSIHLP PHPAAALLFS PLSLTGTFPR EDTKAPGSRK PIHSIPHKAR HKRTKPMASD
101: GSGVVTVYGS NGAELLEPSK QPKSATFSVK VGLAQMLRGG VIMDVVTPEQ ARLAEEAGAC AVMALERVPA DIRAQGGVAR MSDPGLIRDI KRAVTIPVMA
201: KARIGHFVEA QILEAVGVDY VDESEVLTPA DDAHHINKHN FRVPFVCGCR DLGEALRRVR EGAAMIRTKG EAGTGNVVEA VRHVRSVMGD VRALRSMDDD
301: EVFAYAKRIA APYDLVMQTK QLGRLPVVQF AAGGVATPAD AALMMQLGCD GVFVGSGIFK SGDPARRARA IVQAVTHYSD PTILADVSTG LGEAMVGINL
401: NDPKVERYAA RSE

Best Arabidopsis Sequence Match ( AT5G01410.2 )
(BLAST)

001: MEGTGVVAVY GNGAITEAKK SPFSVKVGLA QMLRGGVIMD VVNAEQARIA EEAGACAVMA LERVPADIRA QGGVARMSDP QMIKEIKQAV TIPVMAKARI
101: GHFVEAQILE AIGIDYIDES EVLTLADEDH HINKHNFRIP FVCGCRNLGE ALRRIREGAA MIRTKGEAGT GNIIEAVRHV RSVNGDIRVL RNMDDDEVFT
201: FAKKLAAPYD LVMQTKQLGR LPVVQFAAGG VATPADAALM MQLGCDGVFV GSGIFKSGDP ARRARAIVQA VTHYSDPEML VEVSCGLGEA MVGINLNDEK
301: VERFANRSE

Arabidopsis Description

PDX13RSR4 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.